PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.142
Common NameAMTR_s00021p00184450, LOC18442251
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 264aa    MW: 29980.5 Da    PI: 4.6472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.142genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20124174255
                                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                               +y+GVr ++ +g+++AeIrd +    + +r++lg+f+taeeAa a+++a+++++g
  evm_27.model.AmTr_v1.0_scaffold00021.142 124 RYRGVRKRP-WGKYAAEIRDSTR---HgARVWLGTFDTAEEAAMAYDKAALSMRG 174
                                               7********.**********422...25*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-31124183IPR001471AP2/ERF domain
PfamPF008471.0E-14124174IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23124184IPR016177DNA-binding domain
SMARTSM003804.2E-36124188IPR001471AP2/ERF domain
CDDcd000181.23E-28124182No hitNo description
PROSITE profilePS5103223.433124182IPR001471AP2/ERF domain
PRINTSPR003672.1E-11125136IPR001471AP2/ERF domain
PRINTSPR003672.1E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAIGMDYSPK LEDMLLENIW ASFIAGNPEN RNTENPTNSH VSTHSWGELP ALTQTNGCQD  60
ILERLPRLGR WISMGSENWD DLLDGISLET KNGNCSAVQP EEERNTEVSK PKAMVEKERE  120
AERRYRGVRK RPWGKYAAEI RDSTRHGARV WLGTFDTAEE AAMAYDKAAL SMRGPRTFLN  180
FPLEMVHQAL SRTEKPVCHD SKLGFRDRRE EQQVEDMAMV QTPWKKGFDS MAPDEGLWEN  240
TDVVELQDLG NDYLESLLAS LCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-271241841474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852536.20.0ethylene-responsive transcription factor 15
TrEMBLW1PZW90.0W1PZW9_AMBTC; Uncharacterized protein
STRINGERN140030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-24ethylene response factor 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]