PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 195aa MW: 22121.8 Da PI: 7.4101

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.321	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.6	3.1e-18	11	59	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aaka+++a++ + evm_27.model.AmTr_v1.0_scaffold00019.321 11 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAAKAYDEAARLMC 59 69****9.******8.....334********************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.95E-34	10	68	No hit	No description
SMART	SM00380	7.9E-41	11	74	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.1E-33	11	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.66E-20	11	69	IPR016177	DNA-binding domain
Pfam	PF00847	8.9E-11	11	60	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.495	11	68	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-10	12	23	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-10	34	50	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MPNTSMPRTQ RFRGVRQRHW GSWVSEIRHP LLKTRIWLGT FETAEDAAKA YDEAARLMCG 60 PRARTNFPFD PNNSQNSPRV LSPNLTAKLQ RCCLASLQEH KPSNPCRDKP GTSKRIENGG 120 ESSGSNGDHE KGQNCQNSDD ESIEQMIQEL LYYGSMEIGF ISLLGRSQRG ILINQEKFEI 180 NASDWSLIVE YFDW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-17	8	75	2	70	ATERF1
3gcc_A	4e-17	8	75	2	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011623943.1	1e-118	ethylene-responsive transcription factor ERF003
Swissprot	Q94AW5	1e-53	ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBL	W1PHA6	1e-144	W1PHA6_AMBTC; Uncharacterized protein
STRING	ERN07353	1e-145	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	6e-44	ERF family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00019.321

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]