PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00018.28
Common NameAMTR_s00018p00074980
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 789aa    MW: 87913.8 Da    PI: 4.9768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00018.28genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.15.2e-4771323128
                                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyat 70 
                                              pGfrFhPtd+el+++yL+kk++gk  ++ +vi+evd++k+ePwdLp k  +k++  ew+fF++rd ky++
  evm_27.model.AmTr_v1.0_scaffold00018.28   7 PGFRFHPTDDELISHYLTKKINGKG-DV-QVIPEVDMCKCEPWDLPgKsPIKTRYPEWHFFCPRDIKYPN 74 
                                              9***********************9.55.69***************4334555666************** PP

                                      NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              g+r+nrat++gyWkatgk ++++sk +g l+g+k+tLvf++gr+p+ ++t W+mheyr+
  evm_27.model.AmTr_v1.0_scaffold00018.28  75 GRRSNRATAAGYWKATGKARKIKSKfHGFLIGTKRTLVFHEGRSPR-KRTPWIMHEYRV 132
                                              ************************999999****************.8*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.2215155IPR003441NAC domain
SuperFamilySSF1019412.75E-526155IPR003441NAC domain
PfamPF023651.4E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MNLYDLPGFR FHPTDDELIS HYLTKKINGK GDVQVIPEVD MCKCEPWDLP GKSPIKTRYP  60
EWHFFCPRDI KYPNGRRSNR ATAAGYWKAT GKARKIKSKF HGFLIGTKRT LVFHEGRSPR  120
KRTPWIMHEY RVDGHALQDL NGSQDAYVLC RLFNKDGLNE KSDDPRYDGV ELSDLSPNPS  180
KSSAARTVID GEHGEQFDQT SKLDVKETNV QETSSPKIMD SNYLTKFLLE LLATDDSLQP  240
IESEQHYKGD EEQEASDLFH VPNYEPLVLE NHMPSSSSFC SNPGTFDDGG FEASMEGWDG  300
LGVVNSYRPS SVPRSESFDD LLNFDEGQVG EWDGGHIPSI NFIGHCESGI VRRERQPVPR  360
DNVRFQGAAS RRVCLQMLSI GGAFHEAEEH EETQKDGGTL VAVLQGLEDE TEMSVQVKDT  420
PPVRLLPAAE VEEGLQQESY PCGAQIKFIQ PLRQHAKKRV LCRSPTRAMG IDSLEERKVD  480
ADPLEEREVL ERDMWPMSRM IHVPDSDSES SNKSGMAEPR LGALNVNVEE IDTKSSRGIT  540
KPNPLRIPKS LKIGCAVILA IVAILVIMVL IFVKGDKEQE ALDLFPVPNY EPLVLEKPIH  600
VPPSSSVFSN LGKFAGKGFE ASTGDLDGLS VVNPHRSSSV SSDEFFDNLL NFDENHMGEW  660
NGGHNTSIKG HCIKEYLPTK AKREKDSGTL AAVLQGLEDE TEMSVQVKDA PPVTSLQAAE  720
VEEGLQHESY PCGAQIKLIQ PVQLHAKKKV LHGSPTRAMS GDPLEERIVD ADPLEEREVL  780
ERDMQPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-40716117174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524269.10.0protein NTM1-like 9
TrEMBLW1PDV60.0W1PDV6_AMBTC; Uncharacterized protein
STRINGERN081220.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.14e-60NAC domain containing protein 45
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]