PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NAC

Protein Properties

Length: 568aa MW: 63464.2 Da PI: 6.065

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00018.27	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.4e-52	9	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 lppGfrF+P+deelv++yL +k++g + +vi+e+d++k+ePwdLp k +k+e+ ew+fF++rd+ky evm_27.model.AmTr_v1.0_scaffold00018.27 9 LPPGFRFRPSDEELVSYYLIRKINGGG-GV-DVIPEIDMCKCEPWDLPgKsIIKTEDPEWFFFCPRDRKY 76 79*********************99.34.68***********6446777888******** PP NAM 69 atgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+r+nrat++gyWkatgkd++++sk +++l+g+kktLvfy+grap+g++t+W+mheyr+ evm_27.model.AmTr_v1.0_scaffold00018.27 77 PNGRRSNRATEAGYWKATGKDRTIKSKsRRSLIGTKKTLVFYEGRAPHGKRTHWIMHEYRA 137 **********************977788*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-59	3	160	IPR003441	NAC domain
PROSITE profile	PS51005	58.937	9	160	IPR003441	NAC domain
Pfam	PF02365	5.5E-28	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0071470	Biological Process	cellular response to osmotic stress
GO:1900426	Biological Process	positive regulation of defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0005886	Cellular Component	plasma membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MAAVSLESLP PGFRFRPSDE ELVSYYLIRK INGGGGVDVI PEIDMCKCEP WDLPGKSIIK 60 TEDPEWFFFC PRDRKYPNGR RSNRATEAGY WKATGKDRTI KSKSRRSLIG TKKTLVFYEG 120 RAPHGKRTHW IMHEYRANGN ALQDLNGSQD AYVLCRLFKK DGLNEKGNDP SYDVVERSDL 180 SPDPSKSSPG GAVINGDHGE QLDQTSKLKV ETNVQDTSSP EMTDSDYLNN LLEEFLAADD 240 SLQPIESEQH YKGDEAQEAS DLFRVLDYEP LALEKAIHMP PSSSFCSNPG TFDGEGFEAS 300 TGDLDGLGVV NLHNPSSVPS TEFFDDLFNF DEEGHVREWD GGHNPSLKIG HSQSGIVRRE 360 RQPGPRYNPP VLPFQGTASR RICLQMQSIG GALHEAEEEE EREKDRGTVR AVLQGLEYKT 420 EIDTPPVIQF QGAEVEEGLQ HESYPRVAQL ARRRPKKKVL RRSPTRAMGS GPSEEGKVRE 480 TYMRPMSRMI HEPHSDAESS NKRGMVEQRL GALNVNVEEI DTNSSRGVTK PNRLRIPKSL 540 KIGRAVALSV FAILLVTVLI FVKVFFA*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MAAVSLESLP PGFRFRPSDE ELVSYYLIRK INGGGGVDVI PEIDMCKCEP WDLPGKSIIK  60
TEDPEWFFFC PRDRKYPNGR RSNRATEAGY WKATGKDRTI KSKSRRSLIG TKKTLVFYEG  120
RAPHGKRTHW IMHEYRANGN ALQDLNGSQD AYVLCRLFKK DGLNEKGNDP SYDVVERSDL  180
SPDPSKSSPG GAVINGDHGE QLDQTSKLKV ETNVQDTSSP EMTDSDYLNN LLEEFLAADD  240
SLQPIESEQH YKGDEAQEAS DLFRVLDYEP LALEKAIHMP PSSSFCSNPG TFDGEGFEAS  300
TGDLDGLGVV NLHNPSSVPS TEFFDDLFNF DEEGHVREWD GGHNPSLKIG HSQSGIVRRE  360
RQPGPRYNPP VLPFQGTASR RICLQMQSIG GALHEAEEEE EREKDRGTVR AVLQGLEYKT  420
EIDTPPVIQF QGAEVEEGLQ HESYPRVAQL ARRRPKKKVL RRSPTRAMGS GPSEEGKVRE  480
TYMRPMSRMI HEPHSDAESS NKRGMVEQRL GALNVNVEEI DTNSSRGVTK PNRLRIPKSL  540
KIGRAVALSV FAILLVTVLI FVKVFFA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	8	166	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	8	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	8	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	8	166	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	8	166	19	174	NAC domain-containing protein 19
3swm_B	1e-46	8	166	19	174	NAC domain-containing protein 19
3swm_C	1e-46	8	166	19	174	NAC domain-containing protein 19
3swm_D	1e-46	8	166	19	174	NAC domain-containing protein 19
3swp_A	1e-46	8	166	19	174	NAC domain-containing protein 19
3swp_B	1e-46	8	166	19	174	NAC domain-containing protein 19
3swp_C	1e-46	8	166	19	174	NAC domain-containing protein 19
3swp_D	1e-46	8	166	19	174	NAC domain-containing protein 19
4dul_A	1e-46	8	166	16	171	NAC domain-containing protein 19
4dul_B	1e-46	8	166	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00108	PBM	Transfer from AT4G35580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006846446.1	0.0	protein NTM1-like 9 isoform X1
Refseq	XP_011624193.1	0.0	protein NTM1-like 9 isoform X1
TrEMBL	W1PKD3	0.0	W1PKD3_AMBTC; Uncharacterized protein
STRING	ERN08121	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.2	1e-74	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00018.27
Entrez Gene	18436362

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]