PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00018.161
Common NameAMTR_s00018p00250840, LOC18436499
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRF
Protein Properties Length: 561aa    MW: 60823.8 Da    PI: 8.214
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00018.161genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.75.5e-25166209144
                                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                               d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  evm_27.model.AmTr_v1.0_scaffold00018.161 166 DPEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVE 209
                                               79***************************************987 PP
2QLQ61.52.3e-21108143237
                                       QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                               +FT++Q+q+L++Q+l++Ky++a++PvP++L+ +i+k
  evm_27.model.AmTr_v1.0_scaffold00018.161 108 PFTPSQWQELEQQALIFKYMMASVPVPQDLVNPIRK 143
                                               8*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-11107143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.161108143IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-16108142IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.609166210IPR014977WRC domain
PfamPF088794.0E-21167209IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEMDGGLRGE KRAQRRGEEK ESWVPQKLSR SDSFPFRIPP PFSRCEGDGP TFYNYGDGRS  60
SDIYDVPAGA VPVSVAGAGA GAGAASVRTM QPFPSALKSP GMASLRFPFT PSQWQELEQQ  120
ALIFKYMMAS VPVPQDLVNP IRKSLPLSHP NLGWGPFSLR FANATDPEPG RCRRTDGKKW  180
RCSRDVAPDQ KYCERHMHRG RPRSRKPVEL QIQNNQTQPN DATTSIAAAA SSSTLTPHPS  240
PCSSSPATLC SLNPSALSVK PYQSSGFVAN KASCSNSEFK VPSPNLISAV QDKDSSRFLD  300
WMKGEAAGEQ WQLMQQKGGR LHPRLNSSAN THVFNYNDEL NLVSEPEDIR VSSAHFSLGS  360
MQNSNQSGFF FGSDLTTLEP ERQPRHFIDA WSQTRDSSWP QGTEKPLLSS ASKLSLSSLT  420
LSMSGNEEDI DPVQMGLGLS DSERESSIKR QPLSWMMPVS WQSSTPGGPL AEVLQSSTPT  480
NAASPNNCNG KSSSGGLNLM TDGWGEANSR DSPKQVSSPT GVLQKTLASL SDSSSGSSPT  540
FAAKSELALQ WLHQQKLPPT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846580.10.0growth-regulating factor 4
TrEMBLW1PM890.0W1PM89_AMBTC; Uncharacterized protein
STRINGERN082550.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-42growth-regulating factor 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]