PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00017.187
Common NameAMTR_s00017p00232330, LOC18436843
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 372aa    MW: 40143 Da    PI: 7.2511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.187genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-20181230255
                                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                               +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  evm_27.model.AmTr_v1.0_scaffold00017.187 181 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRG 230
                                               7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.607181238IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22181239IPR016177DNA-binding domain
SMARTSM003802.5E-37181244IPR001471AP2/ERF domain
PfamPF008472.6E-14181230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-33181239IPR001471AP2/ERF domain
PRINTSPR003677.6E-12182193IPR001471AP2/ERF domain
CDDcd000182.21E-28189240No hitNo description
PRINTSPR003677.6E-12204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCTKVAHRKG YSDEWLNFPA PENEEEGEGA APSFGGYTSS QEMSAMVSAL THVVASEGPE  60
LRPEHWYSRQ DLPNFSTSSY LVSSSTSSLV SSSSSSRLKR GREEDQPSGS DSGGLRFYQS  120
CFPGASLGPF RQVSPLVGSE QGSTISHSGG GSSITVSAST IVTSSSSPSS ISEENPERRR  180
RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDTAESAARA YDEAALRFRG TRAKLNFPEN  240
VQLRPPINPN PSVSLSTIPS LSPLPTSSSY SPYRPDVQGG QSSFSFSHLP HDYIQYSQLL  300
QSHQGLPRPP AQSLLDQCFN VGSSSSGIPA YPQGYPMVRT PVFQYGLPET QSQAPESSSP  360
AAERYPTTSS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23180241163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847128.10.0ethylene-responsive transcription factor ABR1
TrEMBLW1PLT90.0W1PLT9_AMBTC; Uncharacterized protein
STRINGERN087090.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-20ethylene response factor 110
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]