PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00017.176
Common NameAMTR_s00017p00226990
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 263aa    MW: 28665.9 Da    PI: 9.1963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.176genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14133176855
                                               HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                Er RR+++++ f++L +llP++      K +K++i+ +Av+YIksLq
  evm_27.model.AmTr_v1.0_scaffold00017.176 133 TERERRKKMRTMFSNLHSLLPQL----PAKADKSTIVDEAVNYIKSLQ 176
                                               6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.367125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16126188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15129188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-14130180No hitNo description
PfamPF000106.2E-11133176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10133181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MANELEPAPN NETLFWDFPS HPPSPKPLQL YQGQPIWPLS NSDNSSSEPG FAMASAKGTM  60
ASNSNSPTSS KRAMVQNHGE EANPKRKKKK KGKQSEEEEG EEREDPSSSV PAPPRSGSNS  120
KATESDHEIH IWTERERRKK MRTMFSNLHS LLPQLPAKAD KSTIVDEAVN YIKSLQKSLQ  180
ALQKQKTEKG RAVGSNECEL GAPRFESRES FLADQGSSRS CVGSVIQQPP VAFSPFSPSS  240
CFQTWSSPNV VVGGGLRSGL GR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490KRKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624414.11e-141transcription factor bHLH95
TrEMBLW1PL020.0W1PL02_AMBTC; Uncharacterized protein
STRINGERN086980.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-22bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]