PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

TCP

Protein Properties

Length: 500aa MW: 52155.9 Da PI: 7.6552

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.13	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.4	4.1e-41	111	216	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a++ evm_27.model.AmTr_v1.0_scaffold00017.13 111 VAKRSSKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANF 180 689*****************************************************************99 PP TCP 73 c.eaesssssasnsssgkaaksaakskksqksaasalnlakesr 115 + ++s +s +s+ s a++ +++++ l ++++ + evm_27.model.AmTr_v1.0_scaffold00017.13 181 StLNVSLRSGGSSAMS------GASKAAPHHHSF--LGIQHHAS 216 9555555555552222......222222222222..33333211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-37	115	211	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.418	116	170	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEQGDHVRSK TNSEGGGGGG PSSSTPSSSQ QQQQQQQQQQ QQMVAFDGRG LVVGYRGEPS 60 AKEIPGPFMG SIGPSSTHVE LAMSTKPEPT KPEGSNPGAI VPIQDPSKKL VAKRSSKDRH 120 TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF 180 STLNVSLRSG GSSAMSGASK AAPHHHSFLG IQHHASARPD WERAEDAARA VHEQSILGFQ 240 HDNLLAAAAA GGDHLTGEPM GGDPGENYVR KRFREDLFKD DGAEAAKPLR GMQSQQQRPP 300 PEAARPVMPA AAMWAVAAAP AAGLSSSPGA FWMLPVSAGA SSPGVMAAAG PSEPIWTFPP 360 SAAGPSTMYR VPAGTSIHLG GSGSLQSGNT IQAPLHFMPR INISGGLAGL ERVGHVPLGS 420 MLGPPGSHNL GLGISDTNLG MLAALNAYNR GSVGSEQQQG GQQQTAQQAM EQVRHHQQQQ 480 QQQQQQGADS GDDHQTSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEQGDHVRSK TNSEGGGGGG PSSSTPSSSQ QQQQQQQQQQ QQMVAFDGRG LVVGYRGEPS  60
AKEIPGPFMG SIGPSSTHVE LAMSTKPEPT KPEGSNPGAI VPIQDPSKKL VAKRSSKDRH  120
TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF  180
STLNVSLRSG GSSAMSGASK AAPHHHSFLG IQHHASARPD WERAEDAARA VHEQSILGFQ  240
HDNLLAAAAA GGDHLTGEPM GGDPGENYVR KRFREDLFKD DGAEAAKPLR GMQSQQQRPP  300
PEAARPVMPA AAMWAVAAAP AAGLSSSPGA FWMLPVSAGA SSPGVMAAAG PSEPIWTFPP  360
SAAGPSTMYR VPAGTSIHLG GSGSLQSGNT IQAPLHFMPR INISGGLAGL ERVGHVPLGS  420
MLGPPGSHNL GLGISDTNLG MLAALNAYNR GSVGSEQQQG GQQQTAQQAM EQVRHHQQQQ  480
QQQQQQGADS GDDHQTSSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006846954.1	0.0	transcription factor TCP8
Refseq	XP_020524563.1	0.0	transcription factor TCP8
Refseq	XP_020524564.1	0.0	transcription factor TCP8
TrEMBL	W1PMY6	0.0	W1PMY6_AMBTC; Uncharacterized protein
STRING	ERN08535	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4591	10	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-54	TCP family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00017.13
Entrez Gene	18436658

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]