PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.96
Common NameAMTR_s00016p00138470
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 384aa    MW: 42662.7 Da    PI: 7.7481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.96genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08184231455
                                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  evm_27.model.AmTr_v1.0_scaffold00016.96 184 SHSLAERVRREKISERMKLLQGLVPGC----DKVTGKALMLDEIINYVQSLQ 231
                                              8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.01E-9178235No hitNo description
SuperFamilySSF474592.22E-16178247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16180245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSAFSHQPLM DLAFISNWNG KFSGIEMNAC FSNGVQNFNN LQVFPSSDEL KKWGFNSGDC  60
NQFNGGFESH FTGEVGENVE TQMKIGAIAE CESRTDAESD KVMQETSSDQ NSIEKKRRKS  120
NGYSVNSSHS KENIGGKGKR SKSNREERKP RSEQSNDKSS KEGGDDPTKS YIHVRARRGQ  180
ATDSHSLAER VRREKISERM KLLQGLVPGC DKVTGKALML DEIINYVQSL QKQVEFLSMK  240
LASVNPMFYN IDMEMEVCME KPEKLQSLNA PLPLLQASCH TQPTIDYEAI TASFANTTAF  300
PTTTNYSLFN NSGSILLHDQ RPTAFSECKV SAEKVTLIQN PRGSLFCSRA LNEGKGTRGK  360
ERETRDSDPP NKTISYRDPS AAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114118KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522916.10.0transcription factor bHLH137-like isoform X2
RefseqXP_020522918.10.0transcription factor bHLH137-like isoform X2
TrEMBLW1PE100.0W1PE10_AMBTC; Uncharacterized protein
STRINGERN061830.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-47bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]