PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 190aa MW: 20717.2 Da PI: 8.9767

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.53	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.3	5.3e-20	52	100	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+++++g evm_27.model.AmTr_v1.0_scaffold00016.53 52 YRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAVAYDKAALRFKG 100 9*****.******94....45*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.44E-22	51	109	IPR016177	DNA-binding domain
SMART	SM00380	2.4E-39	51	114	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-33	51	109	IPR001471	AP2/ERF domain
CDD	cd00018	9.69E-34	51	109	No hit	No description
Pfam	PF00847	1.3E-12	51	100	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.856	51	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.4E-12	52	63	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.4E-12	74	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MELPLSLSLS RVERVPCKRE EEPQNPISQL TEEGIININT TTTTTNVKKR NYRGVRQRPW 60 GKWAAEIRDP KKAARVWLGT FDTAEDAAVA YDKAALRFKG TKAKLNFPER VQSSSIVNQF 120 MGPEVGATPV LSPASYPEIY QYAELLRGSG EEVENSGPGF GVFEEKKPVV GSKSESSSSG 180 FGSGTSWSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-28	47	113	1	68	ATERF1
3gcc_A	3e-28	47	113	1	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011623403.1	1e-125	ethylene-responsive transcription factor ERF114
Swissprot	Q9FH54	9e-39	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	W1PGB8	1e-135	W1PGB8_AMBTC; Uncharacterized protein
STRING	ERN06140	1e-135	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	8e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00016.53

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]