PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00016.335 | ||||||||
Common Name | AMTR_s00016p00255820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | FAR1 | ||||||||
Protein Properties | Length: 582aa MW: 63006.7 Da PI: 4.7589 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.7 | 1.6e-27 | 128 | 213 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 fY++YA ++GF vr+ +s++skr+geit ++fvC+k+g+r+++ + ++r+r+ tr gC+a++++ + evm_27.model.AmTr_v1.0_scaffold00016.335 128 FYKAYAMRLGFGVRVGTSRRSKRSGEITAQRFVCNKQGFRAKKYLS---SKRPRPATREGCNAMINLIR 193 ******************************************9887...99****************** PP FAR1 71 ekdgkwevtkleleHnHela 90 +++gkw+v+ ++++HnHel evm_27.model.AmTr_v1.0_scaffold00016.335 194 RDSGKWVVSIFVSDHNHELL 213 ******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-24 | 128 | 213 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MECETNDMNV TGSNDGNVNG PSLETSDIYG LENLEDEENP ELKTRMKVLE ENMDHQFHEE 60 RVSDECLEDQ GCSSTSDEER NQEHTDLDSE TNLGTSLEEI NEMVGHSVGD IDPYVGMEFE 120 SVEAAETFYK AYAMRLGFGV RVGTSRRSKR SGEITAQRFV CNKQGFRAKK YLSSKRPRPA 180 TREGCNAMIN LIRRDSGKWV VSIFVSDHNH ELLAPIPFHR PRRRVSNTTR NLIHTLDKAR 240 IRPARMVSAS SAQSTEGATN EEVYNVSVRA LQKALQEILA VKKKVEGVTQ LGSPVSGVQE 300 AETCHGSQPS NTIEKGGPCG NPQQTPTTYI LYDQTTGLSV MPVFFSTAPA AQAPNQPQQA 360 IYPANPALIK VNPSPTQAQV KPSSIRAAAL AAGARIAPAE TAASLLRAAR SKNVIHVGPS 420 LLDKIIADIN GPKKKPSGTG NADAGPSRTE SNGGSSNGFG DSLGGAEKGE DMKLELAKEP 480 DPSVTESSAT DENPGNVERE SVEDQSHSVV GSSGTKDNSG NVEREMGREE NQPIIKGNVE 540 REMGREENQA IMVCLGAEEN PGNVERELAN EQNQLLIDSF E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 178 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011623499.2 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | W1P954 | 0.0 | W1P954_AMBTC; Uncharacterized protein | ||||
STRING | ERN06422 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3376 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-30 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00016.335 |
Publications ? help Back to Top | |||
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