PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.335
Common NameAMTR_s00016p00255820
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 582aa    MW: 63006.7 Da    PI: 4.7589
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.335genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.71.6e-27128213290
                                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 
                                               fY++YA ++GF vr+ +s++skr+geit ++fvC+k+g+r+++  +   ++r+r+ tr gC+a++++ +
  evm_27.model.AmTr_v1.0_scaffold00016.335 128 FYKAYAMRLGFGVRVGTSRRSKRSGEITAQRFVCNKQGFRAKKYLS---SKRPRPATREGCNAMINLIR 193
                                               ******************************************9887...99****************** PP

                                      FAR1  71 ekdgkwevtkleleHnHela 90 
                                               +++gkw+v+ ++++HnHel 
  evm_27.model.AmTr_v1.0_scaffold00016.335 194 RDSGKWVVSIFVSDHNHELL 213
                                               ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-24128213IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MECETNDMNV TGSNDGNVNG PSLETSDIYG LENLEDEENP ELKTRMKVLE ENMDHQFHEE  60
RVSDECLEDQ GCSSTSDEER NQEHTDLDSE TNLGTSLEEI NEMVGHSVGD IDPYVGMEFE  120
SVEAAETFYK AYAMRLGFGV RVGTSRRSKR SGEITAQRFV CNKQGFRAKK YLSSKRPRPA  180
TREGCNAMIN LIRRDSGKWV VSIFVSDHNH ELLAPIPFHR PRRRVSNTTR NLIHTLDKAR  240
IRPARMVSAS SAQSTEGATN EEVYNVSVRA LQKALQEILA VKKKVEGVTQ LGSPVSGVQE  300
AETCHGSQPS NTIEKGGPCG NPQQTPTTYI LYDQTTGLSV MPVFFSTAPA AQAPNQPQQA  360
IYPANPALIK VNPSPTQAQV KPSSIRAAAL AAGARIAPAE TAASLLRAAR SKNVIHVGPS  420
LLDKIIADIN GPKKKPSGTG NADAGPSRTE SNGGSSNGFG DSLGGAEKGE DMKLELAKEP  480
DPSVTESSAT DENPGNVERE SVEDQSHSVV GSSGTKDNSG NVEREMGREE NQPIIKGNVE  540
REMGREENQA IMVCLGAEEN PGNVERELAN EQNQLLIDSF E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623499.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLW1P9540.0W1P954_AMBTC; Uncharacterized protein
STRINGERN064220.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3376727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-30FAR1-related sequence 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]