PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.277
Common NameAMTR_s00016p00245230
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 160aa    MW: 18448.2 Da    PI: 9.3154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.277genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-062345123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                              ++C+ C+k F r  nL+ H r H
  evm_27.model.AmTr_v1.0_scaffold00016.277 23 FVCEVCNKGFQRDQNLQLHRRGH 45
                                              89*******************88 PP
2zf-C2H213.30.0002599121123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               +kC +C+k +  +s+ k H +++
  evm_27.model.AmTr_v1.0_scaffold00016.277  99 WKCDKCSKKYAVQSDWKAHSKVC 121
                                               58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-82245No hitNo description
Gene3DG3DSA:3.30.160.602.3E-62245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.1E-52345IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0212345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.972345IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SMARTSM003551106494IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-587119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.33E-894119No hitNo description
SMARTSM0035515099119IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MFADPTAEVI ALSPRTLMAT NRFVCEVCNK GFQRDQNLQL HRRGHNLPWK LKQRATTEAR  60
NKVYVCPEIT CLHHDPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKV  120
CGTKEYTCDC GTIFSRYVLF ISWSYFAHEL LEYGGTCYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-2395155363Zinc finger protein JACKDAW
5b3h_F2e-2395155363Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522932.11e-101protein indeterminate-domain 2 isoform X1
SwissprotQ9LVQ77e-91IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLW1PF661e-117W1PF66_AMBTC; Uncharacterized protein
STRINGERN063641e-118(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-82C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]