PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.247
Common NameAMTR_s00016p00238800, LOC18434527
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 296aa    MW: 32239.4 Da    PI: 4.5755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.247genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-184189355
                                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  evm_27.model.AmTr_v1.0_scaffold00016.247 41 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMKG 89
                                              56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-3340103IPR001471AP2/ERF domain
PROSITE profilePS5103220.564097IPR001471AP2/ERF domain
CDDcd000182.73E-294096No hitNo description
SuperFamilySSF541712.22E-204198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-284197IPR001471AP2/ERF domain
PRINTSPR003673.9E-84152IPR001471AP2/ERF domain
PfamPF008471.8E-114389IPR001471AP2/ERF domain
PRINTSPR003673.9E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDFQNHAYPP PSYSPSSSSS SSASSSQEKR TRRRNQEPGR FLGVRRRPWG RYAAEIRDPS  60
TKERHWLGTF DTAEEAALAY DRAARSMKGL KARTNFMYSD MPHGSSLTSI ISPDDSENLK  120
KSLLMASMIT PANTPFLNQH QNQSSEAPFS FDFLQFQNLN TGFSCSNPAS SGSETSGNLE  180
PQLPTFKTES DGLLSSVLES GSGGVTSQSI SSVQNAMCEE VEFGLWADSY FQSGFSEEIG  240
VDSSMTSSQC MGYNGGYDSF MNSPLLGCMP QVPDTQSCSM PAPTEAIDIG SYLFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19371111181Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844659.10.0ethylene-responsive transcription factor LEP
TrEMBLW1PF400.0W1PF40_AMBTC; Uncharacterized protein
STRINGERN063340.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-32ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]