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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00013.61 | ||||||||
Common Name | AMTR_s00013p00129310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NF-YB | ||||||||
Protein Properties | Length: 75aa MW: 8560.85 Da PI: 9.1511 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 105.5 | 3.6e-33 | 1 | 68 | 17 | 84 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 mkk+l anakiskdaketvqec+sefisf t easdk qre rktin dd+lwa++t+Gfe+yv +++ evm_27.model.AmTr_v1.0_scaffold00013.61 1 MKKALLANAKISKDAKETVQECISEFISFKTREASDKYQRETRKTINRDDFLWAMTTIGFEEYVRAIE 68 9***************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.1E-28 | 1 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.19E-20 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-15 | 1 | 55 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.2E-10 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 2.2E-10 | 38 | 56 | No hit | No description |
PRINTS | PR00615 | 2.2E-10 | 57 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MKKALLANAK ISKDAKETVQ ECISEFISFK TREASDKYQR ETRKTINRDD FLWAMTTIGF 60 EEYVRAIEGL PAKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 9e-24 | 1 | 67 | 17 | 83 | Transcription factor HapC (Eurofung) |
4g92_B | 9e-24 | 1 | 67 | 17 | 83 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586138.1 | 1e-32 | nuclear transcription factor Y subunit B-3 | ||||
Refseq | XP_006602134.1 | 7e-33 | nuclear transcription factor Y subunit B-3 | ||||
Refseq | XP_013460047.1 | 7e-33 | nuclear transcription factor Y subunit B-3 | ||||
Refseq | XP_028214205.1 | 7e-33 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_028246114.1 | 9e-33 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 2e-32 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q75IZ7 | 5e-32 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | W1PP96 | 7e-47 | W1PP96_AMBTC; Uncharacterized protein | ||||
STRING | ERN09883 | 1e-47 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 8e-35 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00013.61 |