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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm_27.model.AmTr_v1.0_scaffold00013.60 |
Common Name | AMTR_s00013p00120040 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
MIKC_MADS |
Protein Properties |
Length: 173aa MW: 19984 Da PI: 9.3864 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00013.60 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 66.4 | 2.8e-21 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien r+vtf+kRr +l KA+E S LC+++va iifss++++yeys+
evm_27.model.AmTr_v1.0_scaffold00013.60 9 KRIENPNARKVTFTKRRDSLLRKAFEFSLLCEVDVAAIIFSSSDEVYEYST 59
79***********************************************96 PP
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2 | K-box | 59.7 | 1.2e-20 | 79 | 154 | 8 | 83 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77
s + + +e + +el+++k+ ++ L+ +++hl G+dL +L+lkeL++Le++L+++l +iR +K ++l e++
evm_27.model.AmTr_v1.0_scaffold00013.60 79 SDQRSSTEFMMEELDNMKSTVRALEAKNKHLCGQDLLPLQLKELKKLEKELNTGLDRIRIRKRQVLSEHT 148
3577889*************************************************************99 PP
K-box 78 eelqkk 83
l++k
evm_27.model.AmTr_v1.0_scaffold00013.60 149 CLLKEK 154
888877 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MGRGKVQLKR IENPNARKVT FTKRRDSLLR KAFEFSLLCE VDVAAIIFSS SDEVYEYSTQ 60 DINQTISKYH RAKGTLNQSD QRSSTEFMME ELDNMKSTVR ALEAKNKHLC GQDLLPLQLK 120 ELKKLEKELN TGLDRIRIRK RQVLSEHTCL LKEKIIVYIY SEGAQEKVTV EE*
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Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |