PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

M-type_MADS

Protein Properties

Length: 62aa MW: 6917.02 Da PI: 10.5644

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.57	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.5	1.5e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie rqvtf+kRrng+lKKA+ELS LCda+va+i+fsstg+l eyss evm_27.model.AmTr_v1.0_scaffold00013.57 9 KRIEKPNTRQVTFTKRRNGLLKKAFELSLLCDADVALIVFSSTGRLSEYSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.501	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-28	2	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.10E-34	2	59	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.6E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MGRGKVELKR IEKPNTRQVT FTKRRNGLLK KAFELSLLCD ADVALIVFSS TGRLSEYSSQ 60 E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-20	1	61	1	61	MEF2C
5f28_B	4e-20	1	61	1	61	MEF2C
5f28_C	4e-20	1	61	1	61	MEF2C
5f28_D	4e-20	1	61	1	61	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269\|PubMed:11828031, ECO:0000269\|PubMed:16326928, ECO:0000269\|PubMed:9869408}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011624863.1	4e-36	MADS-box transcription factor 23
Swissprot	Q40704	2e-26	MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBL	W1PQ00	3e-36	W1PQ00_AMBTC; Uncharacterized protein
STRING	ERN09879	5e-37	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	1e-28	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00013.57

Publications ? help Back to Top
Kyozuka J,Shimamoto K Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants. Plant Cell Physiol., 2002. 43(1): p. 130-5 [PMID:11828031] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]