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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00013.53 |
Common Name | AMTR_s00013p00103080 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
MIKC_MADS |
Protein Properties |
Length: 242aa MW: 27357 Da PI: 8.5778 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00013.53 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 95.4 | 2.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gk ye++s
evm_27.model.AmTr_v1.0_scaffold00013.53 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCS 59
79***********************************************96 PP
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2 | K-box | 101.6 | 1e-33 | 78 | 172 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74
+ + +++++++s+qqe+ +Lk+ e Lqr+qR+llGedL++Ls keL+qLeqqL+ slk+iRs K+++++
evm_27.model.AmTr_v1.0_scaffold00013.53 78 QETTVSTKETQSSQQEYLRLKAHFEALQRSQRNLLGEDLGPLSGKELEQLEQQLDMSLKQIRSIKTQYMI 147
455589999************************************************************* PP
K-box 75 eqieelqkkekelqeenkaLrkkle 99
+q+ +lq+ke++l+e n+aL++kle
evm_27.model.AmTr_v1.0_scaffold00013.53 148 DQLADLQRKEQALSESNNALKRKLE 172
***********************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001708 | Biological Process | cell fate specification |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0048481 | Biological Process | plant ovule development |
GO:0048833 | Biological Process | specification of floral organ number |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKQYEFCSS 60 SSMLKTLERY QKCNYGTQET TVSTKETQSS QQEYLRLKAH FEALQRSQRN LLGEDLGPLS 120 GKELEQLEQQ LDMSLKQIRS IKTQYMIDQL ADLQRKEQAL SESNNALKRK LEAAGGWDST 180 GHQMEYNRQP AQAQADNFFH PLECDPTLQI GYPSGYPNPI TVAAPGPSVT NFMPWMAGIE 240 G*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF925502 | 0.0 | KF925502.1 Amborella trichopoda putative MADS-domain transcription factor AGL9 mRNA, complete cds. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Publications
? help Back to Top |
- Zahn LM, et al.
The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history. Genetics, 2005. 169(4): p. 2209-23 [PMID:15687268] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] - Melzer R, et al.
DEF- and GLO-like proteins may have lost most of their interaction partners during angiosperm evolution. Ann. Bot., 2014. 114(7): p. 1431-43 [PMID:24902716] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
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