PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00013.281

Common Name

AMTR_s00013p00262410, LOC18438272

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

HSF

Protein Properties

Length: 503aa MW: 56305.6 Da PI: 6.1711

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.281	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.7	1.1e-34	22	112	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeek 70 Fl k+ye+++d+++++++sws++ +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ evm_27.model.AmTr_v1.0_scaffold00013.281 22 FLIKTYEMVDDSKTDDVVSWSSSTTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER- 89 9**************************************************************999. PP TTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 71 kskskekiweFkhksFkkgkkellekikrkk 101 weF+++ F k++k++l++i+r+k evm_27.model.AmTr_v1.0_scaffold00013.281 90 --------WEFANEDFVKDQKHMLKNIHRRK 112 ........*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-37	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.5E-59	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.97E-35	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.1E-18	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.9E-30	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MDGAQSSSKD NSGGSGGGPA PFLIKTYEMV DDSKTDDVVS WSSSTTSFVV WNPPEFARLL 60 LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHMLKNIHR RKPIHSHSLP 120 QQQGTSYFGD TERAALEEEI ENLTGEKNAF LINLNKFIQQ QDGTKALLEM LEQRVREMEQ 180 RQERMISFVH RAISNPSFVD QLVRHVQLNT QFPLMNKKRR LPKVDFLQEV VENNFVDNQI 240 IHSASEINTL KPMLGFAQNV SKGFANKLKL ELSPAASDNL LSGSGHSSYE DGDSPQVRTS 300 REAPKEVGMR AKGFLFVSDG LELSDTGTSL GSEKVNTQFP CETVIPPEPH GVRQCSTSTE 360 EGDGNISCHL NLTLSSSPLP VNRSDTSTRI APSHVSQEKD ASAEIRSSSR EDHFKVLDRS 420 PAGNNKMPSS RELANKVQAP QATVGRVNDV FWEQFLTERP GSSDAEEASS SFRGHLSEER 480 DDRTSAFSKS WNSKQNMEQL TL*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MDGAQSSSKD NSGGSGGGPA PFLIKTYEMV DDSKTDDVVS WSSSTTSFVV WNPPEFARLL  60
LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHMLKNIHR RKPIHSHSLP  120
QQQGTSYFGD TERAALEEEI ENLTGEKNAF LINLNKFIQQ QDGTKALLEM LEQRVREMEQ  180
RQERMISFVH RAISNPSFVD QLVRHVQLNT QFPLMNKKRR LPKVDFLQEV VENNFVDNQI  240
IHSASEINTL KPMLGFAQNV SKGFANKLKL ELSPAASDNL LSGSGHSSYE DGDSPQVRTS  300
REAPKEVGMR AKGFLFVSDG LELSDTGTSL GSEKVNTQFP CETVIPPEPH GVRQCSTSTE  360
EGDGNISCHL NLTLSSSPLP VNRSDTSTRI APSHVSQEKD ASAEIRSSSR EDHFKVLDRS  420
PAGNNKMPSS RELANKVQAP QATVGRVNDV FWEQFLTERP GSSDAEEASS SFRGHLSEER  480
DDRTSAFSKS WNSKQNMEQL TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-20	22	111	29	129	Heat shock factor protein 1
5d5v_B	1e-20	22	111	29	129	Heat shock factor protein 1
5d5v_D	1e-20	22	111	29	129	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006848522.1	0.0	heat stress transcription factor A-5
Refseq	XP_020525548.1	0.0	heat stress transcription factor A-5
Refseq	XP_020525549.1	0.0	heat stress transcription factor A-5
TrEMBL	W1PPW2	0.0	W1PPW2_AMBTC; Uncharacterized protein
STRING	ERN10103	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9716	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-108	HSF family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00013.281
Entrez Gene	18438272

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]