PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00013.281 | ||||||||
Common Name | AMTR_s00013p00262410, LOC18438272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | HSF | ||||||||
Protein Properties | Length: 503aa MW: 56305.6 Da PI: 6.1711 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.7 | 1.1e-34 | 22 | 112 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeek 70 Fl k+ye+++d+++++++sws++ +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ evm_27.model.AmTr_v1.0_scaffold00013.281 22 FLIKTYEMVDDSKTDDVVSWSSSTTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER- 89 9****************************************************************999. PP TTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 71 kskskekiweFkhksFkkgkkellekikrkk 101 weF+++ F k++k++l++i+r+k evm_27.model.AmTr_v1.0_scaffold00013.281 90 --------WEFANEDFVKDQKHMLKNIHRRK 112 ........*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 18 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.5E-59 | 18 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.97E-35 | 18 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.1E-18 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.9E-30 | 22 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-18 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 61 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-18 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MDGAQSSSKD NSGGSGGGPA PFLIKTYEMV DDSKTDDVVS WSSSTTSFVV WNPPEFARLL 60 LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHMLKNIHR RKPIHSHSLP 120 QQQGTSYFGD TERAALEEEI ENLTGEKNAF LINLNKFIQQ QDGTKALLEM LEQRVREMEQ 180 RQERMISFVH RAISNPSFVD QLVRHVQLNT QFPLMNKKRR LPKVDFLQEV VENNFVDNQI 240 IHSASEINTL KPMLGFAQNV SKGFANKLKL ELSPAASDNL LSGSGHSSYE DGDSPQVRTS 300 REAPKEVGMR AKGFLFVSDG LELSDTGTSL GSEKVNTQFP CETVIPPEPH GVRQCSTSTE 360 EGDGNISCHL NLTLSSSPLP VNRSDTSTRI APSHVSQEKD ASAEIRSSSR EDHFKVLDRS 420 PAGNNKMPSS RELANKVQAP QATVGRVNDV FWEQFLTERP GSSDAEEASS SFRGHLSEER 480 DDRTSAFSKS WNSKQNMEQL TL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-20 | 22 | 111 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-20 | 22 | 111 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-20 | 22 | 111 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006848522.1 | 0.0 | heat stress transcription factor A-5 | ||||
Refseq | XP_020525548.1 | 0.0 | heat stress transcription factor A-5 | ||||
Refseq | XP_020525549.1 | 0.0 | heat stress transcription factor A-5 | ||||
TrEMBL | W1PPW2 | 0.0 | W1PPW2_AMBTC; Uncharacterized protein | ||||
STRING | ERN10103 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9716 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-108 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00013.281 |
Entrez Gene | 18438272 |
Publications ? help Back to Top | |||
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