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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00013.17 |
| Common Name | AMTR_s00013p00054980, LOC18438026 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
NF-YC |
| Protein Properties |
Length: 232aa MW: 25138.2 Da PI: 5.5893 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00013.17 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 168.5 | 8.1e-53 | 44 | 147 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhae 67
ql fw++q i +++dfk h+lPlarikki+kadedv+misaeaPvl+skacelfilelt+rswlhae
evm_27.model.AmTr_v1.0_scaffold00013.17 44 QLDLFWSYQrqdILQTADFKTHTLPLARIKKIMKADEDVRMISAEAPVLFSKACELFILELTIRSWLHAE 113
7889***997777899****************************************************** PP
NF-YC 68 enkrrtlkksdiaaavtrtdifdflvdivprdel 101
enkrrtl+k+diaaa+trt+ifdflvdivpr+e
evm_27.model.AmTr_v1.0_scaffold00013.17 114 ENKRRTLQKNDIAAAITRTEIFDFLVDIVPREEA 147
*******************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MDPNQQNQQP SQAPARGYPH PNIPITAQSF QRQQQHLLHQ QAQQLDLFWS YQRQDILQTA 60
DFKTHTLPLA RIKKIMKADE DVRMISAEAP VLFSKACELF ILELTIRSWL HAEENKRRTL 120
QKNDIAAAIT RTEIFDFLVD IVPREEAKGD EAGALGVGAP RGLGGFGGMD PGAPGGFYYG 180
QGPSLGTPAL GFEGGPSAAS SANVWWHGEQ GYVDGGVEYG VPPPPPPPAS G*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
Nat Commun, 2016. 7: p. 12768
[PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
PLoS Genet., 2016. 12(9): p. e1006333
[PMID:27685091] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
Mol Plant, 2017. 10(2): p. 260-273
[PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Qi M, et al.
QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
Plant Biotechnol. J., 2019. 17(1): p. 252-263
[PMID:29878511]
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