PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00013.11
Common NameAMTR_s00013p00046610
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 288aa    MW: 32812.9 Da    PI: 7.5675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.11genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05107129223
                                              EETTTTEEESSHHHHHHHHHH.T CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                              +C+ C+++++++ +L+ Hi+  H
  evm_27.model.AmTr_v1.0_scaffold00013.11 107 SCSVCSRVYPTSRLLNIHISEaH 129
                                              6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.379104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081104IPR007087Zinc finger, C2H2
SMARTSM003552.2106129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108129IPR007087Zinc finger, C2H2
SMARTSM003552.6144169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEVKVEERES GISGTVEEEK EGLDFPYWSV IRRKYDPDAP FFASGNIERE LLSKQVALDL  60
TQDEEYELSN MADAEHGKIC CPIAGCGAQL ISLEDFEDHY LSRHSASCSV CSRVYPTSRL  120
LNIHISEAHD SFFQAKVARG YAMYECLVEG CGAKMTSYKS RHQHLVDKHK FPDSFEFLKK  180
HHPSKRQRQR RQACSKKGAV DQKMRGVREE HQKREEREDD QKGIEERKGM DVDGTIEDLV  240
SKVSKLSTAD STPSVVSFGR RHTRGLAFVP RNLQREKKQD LLTNKKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189KRQRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848252.20.0zinc finger protein 511
TrEMBLW1PP470.0W1PP47_AMBTC; Uncharacterized protein
STRINGERN098330.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-106zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]