PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

WOX

Protein Properties

Length: 236aa MW: 26229 Da PI: 7.7606

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.85	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.4	3.7e-21	27	86	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+e+Le l+++ r+p+ae++++++++l +++ ++V++WFqN++a++++ evm_27.model.AmTr_v1.0_scaffold00012.85 27 SRWNPTKEQIEVLEGLYRQgIRTPTAEQIQQITRRLrvygHIEGKNVFYWFQNHKARQRQ 86 7***************99************************************97 PP
2	Wus_type_Homeobox	114.9	3.9e-37	25	88	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi++Le ly++G+rtP++e+iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqkq evm_27.model.AmTr_v1.0_scaffold00012.85 25 VSSRWNPTKEQIEVLEGLYRQGIRTPTAEQIQQITRRLRVYGHIEGKNVFYWFQNHKARQRQKQ 88 579***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.11	22	87	IPR001356	Homeobox domain
SMART	SM00389	8.9E-5	24	91	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.8E-12	25	91	IPR009057	Homeodomain-like
Pfam	PF00046	7.2E-19	27	86	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-8	27	86	IPR009057	Homeodomain-like
CDD	cd00086	8.37E-7	28	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0009942	Biological Process	longitudinal axis specification
GO:0010654	Biological Process	apical cell fate commitment
GO:0048825	Biological Process	cotyledon development
GO:0080167	Biological Process	response to karrikin
GO:0090451	Biological Process	cotyledon boundary formation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDALAPTISA EAEANGPPSP GTAAVSSRWN PTKEQIEVLE GLYRQGIRTP TAEQIQQITR 60 RLRVYGHIEG KNVFYWFQNH KARQRQKQRQ DSLLRANHRI PNVVCNPFYV SQSGLGMYPQ 120 FQRVMVPGGT TKRFNVGNNM EKGHETEGPS GNWGHHETLQ LFPVHPTGIL EDRYNLPHTN 180 LSSSPSSSSS TSSSSPSSSI VFGNYASFSG VNLEGNVEDC TEQPFFDFFS DHRFA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM882141	8e-74	FM882141.1 Amborella trichopoda partial wox2 gene for putative wuschel homeobox protein WOX2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011624163.1	1e-132	WUSCHEL-related homeobox 2
TrEMBL	W1PD07	1e-175	W1PD07_AMBTC; Uncharacterized protein
STRING	ERN07797	1e-176	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8582	11	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	4e-37	WUSCHEL related homeobox 2

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00012.85

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]