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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00011.199 |
| Common Name | AMTR_s00011p00262800, LOC18422704 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
HB-other |
| Protein Properties |
Length: 379aa MW: 41700.3 Da PI: 7.7121 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00011.199 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 22.6 | 1.8e-07 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
+ft+ ++ e+e++ ++ n p +e + LA+k ++ +qV +WFqNrR+ ++
evm_27.model.AmTr_v1.0_scaffold00011.199 13 RFTAPEVLEMEACLREvnNGIPAREVICALAEKFsaspdrtgkvTVNPKQVWNWFQNRRYAQR 75
588888899999999655888999999999999999999999999**************9988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MGRPPHNGAP AFRFTAPEVL EMEACLREVN NGIPAREVIC ALAEKFSASP DRTGKVTVNP 60
KQVWNWFQNR RYAQRTRLIK APGKLSVSPL PRGEEAAAAR NVSNSAPVTS GRHAQDGPQL 120
EFEARSARDG AWYDVAAFIS HRMFETNDPE VRVRFSGFGS EEDEWVNVKK CVRLRSLPCE 180
TAECVVVLPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR YDHDQSEEIV 240
PLRKICRRPE TDYRLQLLYA SKELSSVDLR STPHLGKEAA IVNPNQELKS ADQKIGKQPP 300
LDPNTNTVIA LGALTSQSVN SLAMIQKNPS VIPVMAKEGS ATAATETDPA VNPVNVEKSM 360
AITDVNMGAL ASASGDAQ*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 8e-47 | 120 | 250 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 8e-47 | 120 | 250 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 8e-47 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-116 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
