PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00011.164 | ||||||||
Common Name | AMTR_s00011p00253850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | GATA | ||||||||
Protein Properties | Length: 202aa MW: 22288.7 Da PI: 7.7997 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.8 | 1.9e-20 | 92 | 126 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ evm_27.model.AmTr_v1.0_scaffold00011.164 92 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 126 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.101 | 86 | 122 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-19 | 86 | 139 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.61E-14 | 89 | 128 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.5E-17 | 89 | 132 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.32E-13 | 91 | 123 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 92 | 117 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-18 | 92 | 126 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MHRASSLEEG CSSVDCTLSL GPPSARQRGA SSSSDLGSRP GCGQSSPTGA TRFWWDIDLQ 60 LMHRQQQHQA RQQQRRSSGL SVGGDPLMAR RCANCDTTST PLWRNGPRGP KSLCNACGIR 120 YKKEERRSTT AEHYNEQQQQ QHVVGHLFNP HHLSPRSPSF PLAVEDEEDE EREKAEMVGG 180 APCVSWRLGL STDFSVVHHL T* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020524034.1 | 1e-148 | GATA transcription factor 18 | ||||
TrEMBL | W1NHU7 | 1e-146 | W1NHU7_AMBTC; Uncharacterized protein | ||||
STRING | ERM94740 | 1e-147 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 5e-28 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00011.164 |
Publications ? help Back to Top | |||
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