PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00011.156
Common NameAMTR_s00011p00251570, LOC18422651
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 319aa    MW: 37125.7 Da    PI: 6.9343
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.156genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.32.5e-5671361129
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdk 66 
                                               +ppGfrFhPtdeelv++yL+kk+++k+++l +vi+++d+yk+ePwdL++  ++ + e++ewyfFs++dk
  evm_27.model.AmTr_v1.0_scaffold00011.156   7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIRDIDLYKIEPWDLQEkcRIGNeEQNEWYFFSHKDK 74 
                                               69****************************.9***************953444332556********** PP

                                       NAM  67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                               ky+tg+r+nrat++g+Wkatg+dk+++s k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  evm_27.model.AmTr_v1.0_scaffold00011.156  75 KYPTGTRTNRATAAGFWKATGRDKAIYS-KHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                                               ****************************.899*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-625156IPR003441NAC domain
PROSITE profilePS5100560.3237156IPR003441NAC domain
PfamPF023655.7E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIR DIDLYKIEPW DLQEKCRIGN  60
EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHNLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GPPQEEGWVV CRVFKKRITT IRKASDHESP CWYDDQVSFI  180
PELDSPKRLP TQGDLPFHHH HHHAFSCKQE LELLHYHHHQ HDPFLQLPQL ESPKLPNSSY  240
AIAPQQDNPV TTDWRVLDKF VASQLSHEEA TPKDQESFSD PSGTIEIPEH VSLIIRQPSK  300
DATEYIASAS GCPIDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-50715717166NO APICAL MERISTEM PROTEIN
1ut4_B1e-50715717166NO APICAL MERISTEM PROTEIN
1ut7_A1e-50715717166NO APICAL MERISTEM PROTEIN
1ut7_B1e-50715717166NO APICAL MERISTEM PROTEIN
3swm_A1e-50715720169NAC domain-containing protein 19
3swm_B1e-50715720169NAC domain-containing protein 19
3swm_C1e-50715720169NAC domain-containing protein 19
3swm_D1e-50715720169NAC domain-containing protein 19
3swp_A1e-50715720169NAC domain-containing protein 19
3swp_B1e-50715720169NAC domain-containing protein 19
3swp_C1e-50715720169NAC domain-containing protein 19
3swp_D1e-50715720169NAC domain-containing protein 19
4dul_A1e-50715717166NAC domain-containing protein 19
4dul_B1e-50715717166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006878587.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-132NAC7_ARATH; NAC domain-containing protein 7
TrEMBLW1NG300.0W1NG30_AMBTC; Uncharacterized protein
STRINGERM947320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-108NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]