PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00010.77 | ||||||||
Common Name | AMTR_s00010p00122680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WOX | ||||||||
Protein Properties | Length: 298aa MW: 33481.1 Da PI: 8.6639 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 7.9e-21 | 83 | 142 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Lee++++ +r+p+a++++ ++ +l +++ ++V++WFqN++a+e++ evm_27.model.AmTr_v1.0_scaffold00010.77 83 SRWNPTPEQLRTLEEMYRRgTRTPTADQIQYITGQLrrygKIEGKNVFYWFQNHKARERQ 142 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.1 | 1.5e-36 | 81 | 144 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+PtpeQ++ Lee+y++G+rtP++++iq it +L++yGkie+kNVfyWFQN+kaRerqk+ evm_27.model.AmTr_v1.0_scaffold00010.77 81 TSSRWNPTPEQLRTLEEMYRRGTRTPTADQIQYITGQLRRYGKIEGKNVFYWFQNHKARERQKR 144 689***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.305 | 78 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-6 | 80 | 147 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-12 | 82 | 147 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-18 | 83 | 142 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-8 | 83 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.42E-4 | 84 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGCSDSSSLN MSESSSSYSS GTVRRLRPLI PKPHLFPNAS SSTSSPSCST FLGHSQGDKY 60 FTHNLPGGSD QGRRDAGAQP TSSRWNPTPE QLRTLEEMYR RGTRTPTADQ IQYITGQLRR 120 YGKIEGKNVF YWFQNHKARE RQKRRRRIEA AMELGSCICR EFESQDKKEQ DSFGRRWGGL 180 ELSKNWAPAP TSCCTMRTTE GGGLEREEEW VQLPTFTITG NTTAPKFQST YAELFGERNA 240 SQRSGFDVRE DREGEVETLQ LFPLTSDSVI QAKSNAATIA PNQQSPCNFF EFLPLKN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 147 | KRRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM882146 | 2e-72 | FM882146.1 Amborella trichopoda partial wox1 gene for putative wuschel homeobox protein WOX1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826864.2 | 0.0 | WUSCHEL-related homeobox 1 isoform X1 | ||||
Refseq | XP_020519763.1 | 0.0 | WUSCHEL-related homeobox 1 isoform X1 | ||||
TrEMBL | W1NF48 | 0.0 | W1NF48_AMBTC; Uncharacterized protein | ||||
STRING | ERM94101 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8416 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 6e-29 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.77 |
Publications ? help Back to Top | |||
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