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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00010.77 |
Common Name | AMTR_s00010p00122680 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
WOX |
Protein Properties |
Length: 298aa MW: 33481.1 Da PI: 8.6639 |
Description |
WOX family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00010.77 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 65.4 | 7.9e-21 | 83 | 142 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++t+eql++Lee++++ +r+p+a++++ ++ +l +++ ++V++WFqN++a+e++
evm_27.model.AmTr_v1.0_scaffold00010.77 83 SRWNPTPEQLRTLEEMYRRgTRTPTADQIQYITGQLrrygKIEGKNVFYWFQNHKARERQ 142
7*****************99**************************************97 PP
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2 | Wus_type_Homeobox | 113.1 | 1.5e-36 | 81 | 144 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+++RW+PtpeQ++ Lee+y++G+rtP++++iq it +L++yGkie+kNVfyWFQN+kaRerqk+
evm_27.model.AmTr_v1.0_scaffold00010.77 81 TSSRWNPTPEQLRTLEEMYRRGTRTPTADQIQYITGQLRRYGKIEGKNVFYWFQNHKARERQKR 144
689***********************************************************95 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MGCSDSSSLN MSESSSSYSS GTVRRLRPLI PKPHLFPNAS SSTSSPSCST FLGHSQGDKY 60 FTHNLPGGSD QGRRDAGAQP TSSRWNPTPE QLRTLEEMYR RGTRTPTADQ IQYITGQLRR 120 YGKIEGKNVF YWFQNHKARE RQKRRRRIEA AMELGSCICR EFESQDKKEQ DSFGRRWGGL 180 ELSKNWAPAP TSCCTMRTTE GGGLEREEEW VQLPTFTITG NTTAPKFQST YAELFGERNA 240 SQRSGFDVRE DREGEVETLQ LFPLTSDSVI QAKSNAATIA PNQQSPCNFF EFLPLKN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FM882146 | 2e-72 | FM882146.1 Amborella trichopoda partial wox1 gene for putative wuschel homeobox protein WOX1. |