PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.77
Common NameAMTR_s00010p00122680
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WOX
Protein Properties Length: 298aa    MW: 33481.1 Da    PI: 8.6639
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.77genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.9e-2183142357
                                              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                 Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                              +R+++t+eql++Lee++++ +r+p+a++++ ++ +l    +++ ++V++WFqN++a+e++
  evm_27.model.AmTr_v1.0_scaffold00010.77  83 SRWNPTPEQLRTLEEMYRRgTRTPTADQIQYITGQLrrygKIEGKNVFYWFQNHKARERQ 142
                                              7*****************99**************************************97 PP
2Wus_type_Homeobox113.11.5e-3681144265
                        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                              +++RW+PtpeQ++ Lee+y++G+rtP++++iq it +L++yGkie+kNVfyWFQN+kaRerqk+
  evm_27.model.AmTr_v1.0_scaffold00010.77  81 TSSRWNPTPEQLRTLEEMYRRGTRTPTADQIQYITGQLRRYGKIEGKNVFYWFQNHKARERQKR 144
                                              689***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.30578143IPR001356Homeobox domain
SMARTSM003897.5E-680147IPR001356Homeobox domain
SuperFamilySSF466898.98E-1282147IPR009057Homeodomain-like
PfamPF000461.8E-1883142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-883142IPR009057Homeodomain-like
CDDcd000862.42E-484138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGCSDSSSLN MSESSSSYSS GTVRRLRPLI PKPHLFPNAS SSTSSPSCST FLGHSQGDKY  60
FTHNLPGGSD QGRRDAGAQP TSSRWNPTPE QLRTLEEMYR RGTRTPTADQ IQYITGQLRR  120
YGKIEGKNVF YWFQNHKARE RQKRRRRIEA AMELGSCICR EFESQDKKEQ DSFGRRWGGL  180
ELSKNWAPAP TSCCTMRTTE GGGLEREEEW VQLPTFTITG NTTAPKFQST YAELFGERNA  240
SQRSGFDVRE DREGEVETLQ LFPLTSDSVI QAKSNAATIA PNQQSPCNFF EFLPLKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8821462e-72FM882146.1 Amborella trichopoda partial wox1 gene for putative wuschel homeobox protein WOX1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826864.20.0WUSCHEL-related homeobox 1 isoform X1
RefseqXP_020519763.10.0WUSCHEL-related homeobox 1 isoform X1
TrEMBLW1NF480.0W1NF48_AMBTC; Uncharacterized protein
STRINGERM941010.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-29WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]