PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.503
Common NameAMTR_s00010p00264600
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 368aa    MW: 41265.9 Da    PI: 8.851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.503genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-16101146147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  evm_27.model.AmTr_v1.0_scaffold00010.503 101 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 146
                                               899*****************************.***********996 PP
2Myb_DNA-binding551.8e-17153196146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  evm_27.model.AmTr_v1.0_scaffold00010.503 153 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 196
                                               678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.63296147IPR017930Myb domain
SMARTSM007172.2E-14100149IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-27101194IPR009057Homeodomain-like
PfamPF002496.7E-16101146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-26102154IPR009057Homeodomain-like
CDDcd001675.76E-13104145No hitNo description
PROSITE profilePS5129426.846148202IPR017930Myb domain
SMARTSM007174.4E-14152200IPR001005SANT/Myb domain
PfamPF002494.9E-14153195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-20155201IPR009057Homeodomain-like
CDDcd001675.26E-11155195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTTKYINDSL NLRLHSQSQS MGLFSDKASS SSSSLSLYET RISLSHGFGC SGSSSNESYS  60
KSERGLNAID EGSNHNPIDE TMSENLVLKE PDSGQSKLCA RGHWRPAEDA KLKELVALYG  120
PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLMAAHRL YGNKWAMIAR  180
LFPGRTDNAV KNHWHVIMAR KYREQSSAYR RRKLTQAGVQ RRLEGGGVVS LSNPTSFLSP  240
PSPSVTSGRG DSRSSCRPPV DLLSGIKKAK NSFFSNGGKR WNHNREHDDD DDEAMTNSLS  300
TAFISHQHDH HHPSLMAMMM MHHHHHQEQT APVYYSLQAS ESPEKSSHHF ESTVSLPFID  360
FLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-321012017107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827290.20.0transcription factor MYB44
TrEMBLW1NFC80.0W1NFC8_AMBTC; Uncharacterized protein
STRINGERM945270.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-76myb domain protein 105
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]