PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00010.454 | ||||||||
Common Name | AMTR_s00010p00261450, LOC18422226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 233aa MW: 25868.4 Da PI: 9.1241 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.1 | 7.9e-32 | 29 | 89 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gt...aaalkCaACgCHRnFHRrevee 59 ++ Y+eClkNhAaslGgha+DGCgEfmp +ge +t ++ lkCaACgCHRnFHRre e evm_27.model.AmTr_v1.0_scaffold00010.454 29 RILYRECLKNHAASLGGHALDGCGEFMPISGEIlATgisPEDLKCAACGCHRNFHRREIEG 89 578**************************9887655666999***************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.8E-28 | 30 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-18 | 30 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.872 | 32 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-29 | 32 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-29 | 148 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.53E-19 | 149 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.8E-28 | 160 | 216 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDLSGGKAPE IPAVRFTDTK SINGRKLPRI LYRECLKNHA ASLGGHALDG CGEFMPISGE 60 ILATGISPED LKCAACGCHR NFHRREIEGA DSRGILCDCF VKNSRKRSPP PYYQASSFNS 120 APHMLLALSA GLPEGEQEVR ERKLVERESN GNGKEEGGTR KRFRTKFTAE QKEKMYGFSD 180 KLGWKMQKQD EGLIQEFCDE IGIRRSVLKV WMHNNKSTLG RKDPHLNGNA SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-24 | 159 | 218 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827241.1 | 1e-173 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9FKJ9 | 5e-55 | ZHD12_ARATH; Zinc-finger homeodomain protein 12 | ||||
TrEMBL | W1NG61 | 1e-172 | W1NG61_AMBTC; Uncharacterized protein | ||||
STRING | ERM94478 | 1e-173 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 2e-57 | homeobox protein 26 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.454 |
Entrez Gene | 18422226 |
Publications ? help Back to Top | |||
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