PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.432
Common NameAMTR_s00010p00260100
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 346aa    MW: 38414.9 Da    PI: 8.3673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.432genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.42.1e-30108752128
                                       NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgekt 119
                                               + +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg kt
  evm_27.model.AmTr_v1.0_scaffold00010.432  10 TIGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKT 78 
                                               45789**************************************956677******************** PP

                                       NAM 120 dWvmheyrl 128
                                               dW+mhe+rl
  evm_27.model.AmTr_v1.0_scaffold00010.432  79 DWMMHEFRL 87 
                                               *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.8351118IPR003441NAC domain
PfamPF023656.3E-13387IPR003441NAC domain
SuperFamilySSF1019418.37E-359118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MFYVREEMAT IGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGSKCIG  60
LKKSLVFYKG RAAKGIKTDW MMHEFRLPSL TDSNSPKKPL DKNLPANDSW AICRIFKKTN  120
SMTQRALSQS WVSPLPETNN QDIFSNNISY TNFSSENISC TSEAGPGTQF YSEILHASNP  180
DFSHLNLASY KPINSTLSKP FPLTQTSAPE FAFSPLDMLG PAKSTMDIAS MLLNLSPQIL  240
GDGGKASANV EFGQQLQNQS SSFGVNLQPQ MNENSQNGEG EACLTKRENN SRDVSGNQWC  300
NARAGGFPLN LPSALFDAWK PNWSWDCSSC PSEMSTNYST SKSYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-34912166168NO APICAL MERISTEM PROTEIN
1ut4_B2e-34912166168NO APICAL MERISTEM PROTEIN
1ut7_A2e-34912166168NO APICAL MERISTEM PROTEIN
1ut7_B2e-34912166168NO APICAL MERISTEM PROTEIN
3swm_A2e-34912169171NAC domain-containing protein 19
3swm_B2e-34912169171NAC domain-containing protein 19
3swm_C2e-34912169171NAC domain-containing protein 19
3swm_D2e-34912169171NAC domain-containing protein 19
3swp_A2e-34912169171NAC domain-containing protein 19
3swp_B2e-34912169171NAC domain-containing protein 19
3swp_C2e-34912169171NAC domain-containing protein 19
3swp_D2e-34912169171NAC domain-containing protein 19
4dul_A2e-34912166168NAC domain-containing protein 19
4dul_B2e-34912166168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827219.20.0putative NAC domain-containing protein 94
SwissprotQ9ZVH02e-67FEZ_ARATH; Protein FEZ
TrEMBLW1NG410.0W1NG41_AMBTC; Uncharacterized protein
STRINGERM944560.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.18e-70NAC domain containing protein 94
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]