PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 143aa MW: 15857.2 Da PI: 7.8282

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.85	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.5	1.1e-20	19	69	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + +r++lg+f+taeeAa+a+++a+ +++g evm_27.model.AmTr_v1.0_scaffold00009.85 19 HYRGVRRRP-WGKYAAEIRDS---NrHGARVWLGTFDTAEEAARAYDRAAYAMRG 69 7******.******4...3234***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.85E-18	18	77	No hit	No description
SMART	SM00380	3.2E-34	19	83	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.77E-24	19	79	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.9E-32	19	78	IPR001471	AP2/ERF domain
Pfam	PF00847	4.5E-16	19	69	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.828	19	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-12	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-12	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MTSREEKNEE VGEREQGAHY RGVRRRPWGK YAAEIRDSNR HGARVWLGTF DTAEEAARAY 60 DRAAYAMRGS LAILNFPREI HARPPTGSSS SSSTSHSGSS SSSVGGNPTS STKKEVIEFE 120 YLDDSYLEEL LRSGEEKDRR GK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-36	20	125	15	113	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006827482.1	4e-99	ethylene-responsive transcription factor ERF096
Swissprot	Q9LTC5	2e-40	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	W1NHC4	9e-98	W1NHC4_AMBTC; Uncharacterized protein
STRING	ERM94898	1e-98	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	3e-23	ERF family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00009.85
Entrez Gene	18422946

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]