PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.427
Common NameAMTR_s00009p00268560, LOC18423161
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 466aa    MW: 51221.9 Da    PI: 7.8408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.427genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19223272255
                                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g
  evm_27.model.AmTr_v1.0_scaffold00009.427 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDREAYKLRG 272
                                               59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.84E-32222282No hitNo description
PROSITE profilePS5103222.945223280IPR001471AP2/ERF domain
SMARTSM003809.7E-38223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32223281IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23223281IPR016177DNA-binding domain
PfamPF008471.0E-12224272IPR001471AP2/ERF domain
PRINTSPR003675.4E-11224235IPR001471AP2/ERF domain
PRINTSPR003675.4E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAFASGSGSG SSSSLQETSF GTQGGFPLVL EGQKQLVMEG QGPLFYDASA YSRPLKKARS  60
PDQSQNHPSR PSSSSSALLP LSQIPPPSSV ARLFPFACDS SCSSSPTFSQ MGLGGIPPFF  120
HLQQQQQQQQ QPHQMIAFAP PPPPGSSSSP GSRSSSNSMV MGSHQQQLHH MYQHQRYHEQ  180
LFRYWSDALN LSPRGRAAIL RQQQQQMQMQ DRRSLALLRP TKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEEAA LAYDREAYKL RGDNARLNFP DLFLHKGRGG GDDSTTPPQP  300
QQQLPDSSSS SSSSSSPLPP PPQPPAAALE KSPVLEQRNR DNSNVKALEE QQQLSRPVHG  360
FPASPEFVLG DMDMDEAWFD AIPALGLEGV SWDDDHVEHH HHQLLRRGGG EPSVLLPPSH  420
PPPIDFLSNA ATTPLNTTTT VPLPDCFQSS VASSSSSSYV WRRDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19222280160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827824.10.0ethylene-responsive transcription factor ERF054
TrEMBLW1NJA60.0W1NJA6_AMBTC; Uncharacterized protein
STRINGERM952400.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-38ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]