PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.376
Common NameAMTR_s00009p00264800, LOC18423134
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 189aa    MW: 21744.9 Da    PI: 9.2088
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.376genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.4e-35201102101
                                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB CS
                              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeek 70 
                                               Fl k+y++++d+e +++isw+++g+ fvv+ ++ef++++LpkyFkh nf+SF+RQLn+YgFkk  +++ 
  evm_27.model.AmTr_v1.0_scaffold00009.376  20 FLLKTYDLVNDPEARDIISWNHEGTGFVVWMPQEFSQSLLPKYFKHANFSSFIRQLNTYGFKKAASNR- 87 
                                               9**************************************************************99988. PP

                                               TTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
                              HSF_DNA-bind  71 kskskekiweFkhksFkkgkkellekikrkk 101
                                                       weFkh++F kg ++ll +i rkk
  evm_27.model.AmTr_v1.0_scaffold00009.376  88 --------WEFKHEKFVKGGRHLLMEISRKK 110
                                               ........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.8E-3115109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-4716109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-172043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-177183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSHPDEPSPG SSKARSPAPF LLKTYDLVND PEARDIISWN HEGTGFVVWM PQEFSQSLLP  60
KYFKHANFSS FIRQLNTYGF KKAASNRWEF KHEKFVKGGR HLLMEISRKK GVPSVFPAFL  120
KACDNTRVLE QDLLEENKSL KIERASLQSE INYFKGLQRK LLCCISECVE RGRLGELDFE  180
LIRNSFQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-20810917129Heat shock factor protein 1
5d5v_B6e-20810917129Heat shock factor protein 1
5d5v_D6e-20810917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827773.11e-139heat stress transcription factor B-4d
SwissprotP223356e-38HSF24_SOLPE; Heat shock factor protein HSF24
SwissprotQ6Z9C87e-38HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLW1NJ121e-137W1NJ12_AMBTC; Uncharacterized protein
STRINGERM951891e-138(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.15e-40heat shock transcription factor A7A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  3. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]
  4. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]