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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00009.357 |
Common Name | AMTR_s00009p00263240 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
MYB |
Protein Properties |
Length: 478aa MW: 53269.5 Da PI: 5.6124 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00009.357 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 47 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l +avkq+ g++Wk Ia++++ R + qc +rwqk+l
evm_27.model.AmTr_v1.0_scaffold00009.357 47 KGNWTEEEDAILMQAVKQFNGKNWKQIAKCFN-DRADVQCLHRWQKVL 93
79******************************.************986 PP
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2 | Myb_DNA-binding | 56.2 | 8.1e-18 | 99 | 144 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+WT+eEd+ +v+ v++lG++ W+ +a+ ++ gR +kqc++rw++
evm_27.model.AmTr_v1.0_scaffold00009.357 99 KGPWTKEEDDEIVKQVEKLGTKKWSVVAQSLP-GRIGKQCRERWYNQ 144
79******************************.************96 PP
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3 | Myb_DNA-binding | 53.3 | 6.3e-17 | 151 | 193 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ +WT+eEd l++a++ +G++ W+ Ia+ ++ gRt++++k++w+
evm_27.model.AmTr_v1.0_scaffold00009.357 151 KEPWTQEEDCVLIHAHQIYGNK-WAEIAKFIP-GRTDNSIKNYWN 193
679*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 478 aa
Download sequence Send
to blast |
MEPGSVEEVK EEFGSVEIPI MLDNGSTIDQ YSITRRRTNG PTKRSTKGNW TEEEDAILMQ 60 AVKQFNGKNW KQIAKCFNDR ADVQCLHRWQ KVLNPDVVKG PWTKEEDDEI VKQVEKLGTK 120 KWSVVAQSLP GRIGKQCRER WYNQLNPAIK KEPWTQEEDC VLIHAHQIYG NKWAEIAKFI 180 PGRTDNSIKN YWNCTMKKKL QKQSNVTPLL STSSLSTAGE GLDRSIILAN ENSECSAVTS 240 GQNLGSEVCP ETSSVNLSLL SANQELKPNY NEVHESLKEK TDDNSVGPDL GLFSRCEGNN 300 SRRVSSESTD NENSTRDEVS LTLSLGSLDY TPGPLRNSCI SSVNDDQSRS YSNSIPSLLN 360 SRGTMPSVTS HFLSSNLDNV SPEDILENAA RSFTCTPSIM RKRPLEICAK DETPGSGLRI 420 NDIGRLRKKL FLSPQYRSKS TCAVPVESAD ENILDFPDLD ESLTTKNGLK SISKDHE*
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Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |