PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.293
Common NameAMTR_s00009p00257290
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YC
Protein Properties Length: 167aa    MW: 18489.4 Da    PI: 10.4242
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.293genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC104.47.6e-33691511899
                                     NF-YC  18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                                                h+lPlarikki+k + edv+mis eaP++++kacelfi +++ +sw+ +   krrtl+k d+a+a++ 
  evm_27.model.AmTr_v1.0_scaffold00009.293  69 PHALPLARIKKIMKrSGEDVRMISGEAPIVFAKACELFIEDIAQKSWNLTLRGKRRTLHKDDVAKAINA 137
                                               599**********94569*************************************************** PP

                                     NF-YC  86 tdifdflvdivprd 99 
                                               td+fdfl+d+v  +
  evm_27.model.AmTr_v1.0_scaffold00009.293 138 TDVFDFLIDMVSSH 151
                                               **********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.34E-2568144IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.1E-3172149IPR009072Histone-fold
PfamPF008087.4E-2172135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MNCKEELAGL CRQAGRQAGR PHIPFNFQLH SFHINVNVSS SPLGFLSTVC GVMRQSNREV  60
GMISVKGVPH ALPLARIKKI MKRSGEDVRM ISGEAPIVFA KACELFIEDI AQKSWNLTLR  120
GKRRTLHKDD VAKAINATDV FDFLIDMVSS HQSNTHPQPT SNVLQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-31701481693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021676891.16e-46nuclear transcription factor Y subunit C-3-like
TrEMBLW1NI101e-120W1NI10_AMBTC; Uncharacterized protein
STRINGERM951061e-121(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-32nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]