PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.28
Common NameAMTR_s00009p00081210
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TCP
Protein Properties Length: 199aa    MW: 21164.2 Da    PI: 8.9312
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.28genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.83.9e-342394473
                                      TCP  4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec 73
                                             k  ++ + h+kv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq+a+pai ++tg++++++  s+c
  evm_27.model.AmTr_v1.0_scaffold00009.28 23 KAASSRDYHSKVNGRGRRIRMPALCAARIFQLTRELGHKSDGQTIEWLLQKAEPAIMAATGSGTIPSlsSSC 94
                                             556788********************************************************9999965555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2926106IPR005333Transcription factor, TCP
PROSITE profilePS5136926.1112781IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MATDLMLHHS PKSSSENTPA KRKAASSRDY HSKVNGRGRR IRMPALCAAR IFQLTRELGH  60
KSDGQTIEWL LQKAEPAIMA ATGSGTIPSL SSSCSLFVPS STSNPSMLAP VRVLAAPVRV  120
MPAAPVRVLG PIEEQFPTRF LALSGSSTGG GVSSGGFRHM PFTAMLLRPV DDEDRDGPIM  180
DDCSFELSIN GSSELTLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625716.11e-129transcription factor TCP11
TrEMBLW1NH941e-141W1NH94_AMBTC; Uncharacterized protein
STRINGERM948411e-142(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-30TCP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]