|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm_27.model.AmTr_v1.0_scaffold00008.240 |
Common Name | AMTR_s00008p00268530, LOC18423410 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
Family |
Trihelix |
Protein Properties |
Length: 275aa MW: 30979.4 Da PI: 10.3489 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00008.240 | genome | TAGP | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 69.8 | 5.2e-22 | 45 | 131 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkike 66
W++qe+ +Li+a++e++ +l+rg+lk+ +Weev++ + + gf +++++qC++k+e+l+kry+ +++
evm_27.model.AmTr_v1.0_scaffold00008.240 45 WSHQETAHLIDAYQEKWYSLKRGQLKARHWEEVASSVaLRCGFncpSKTSTQCRHKIEKLRKRYRTERQ 113
***********************************9987788855578********************* PP
trihelix 67 gekkrtsessstcpyfdqle 86
++++ + s+++++fd+l+
evm_27.model.AmTr_v1.0_scaffold00008.240 114 RAGSV--DPSTKWVFFDRLD 131
***96..44558******98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MTASTAEPAP VLVLAMPASS SSARDPSISP PPLPLPPKKQ PPGPWSHQET AHLIDAYQEK 60 WYSLKRGQLK ARHWEEVASS VALRCGFNCP SKTSTQCRHK IEKLRKRYRT ERQRAGSVDP 120 STKWVFFDRL DQMEKGSSTT HRPPPPPPPP DHDSDTTDNE TDNNNNMRSL HHLLLEQPDP 180 PASTRPIPPR FVVGKRSSRP PAEPLSELVG VVRSLGEGFL RIEHMKMELL REVERGRMEM 240 EMKRTQMVLE SQRHVADLIA KAFVARKKSK SSDK*
|