PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00008.223 | ||||||||
Common Name | AMTR_s00008p00265010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 23767.4 Da PI: 10.3493 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.2e-08 | 124 | 164 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L evm_27.model.AmTr_v1.0_scaffold00008.223 124 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 164 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 116 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-14 | 119 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-6 | 125 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-6 | 138 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0080126 | Biological Process | ovary septum development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MTDEQIDMMM LQMEKMPEFY EGFAGNNFSG NSAITSPPPS TSLVGIPSSA LPIPFPSHVP 60 TTLNSQAVGM DLMANLRRNN STAAMREMIF RVAAMQPIHI DPESVKPPKR RNVKISKDPQ 120 SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKTQVQS LERAAATGNG 180 TGRLAFAPVL GHGVSLPKPY QVAETFSPPQ LHGYNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828058.2 | 1e-159 | transcription factor HEC1 | ||||
Swissprot | Q9SND4 | 1e-48 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | W1NJR0 | 1e-158 | W1NJR0_AMBTC; Uncharacterized protein | ||||
STRING | ERM95474 | 1e-158 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 4e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00008.223 |
Publications ? help Back to Top | |||
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