PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 258aa MW: 29462.7 Da PI: 6.874

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00008.115	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.6e-14	77	128	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + +K + a+i+ A++++k+L+ evm_27.model.AmTr_v1.0_scaffold00008.115 77 QRMTHIAIERNRRKQMNEYLSVLRSLMPES---YIQKGDQASIVGGAIDFVKELE 128 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.7E-15	75	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-17	75	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.11E-13	75	132	No hit	No description
PROSITE profile	PS50888	15.955	76	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-12	77	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-11	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.98E-5	177	249	No hit	No description
PROSITE profile	PS51671	8.856	181	257	IPR002912	ACT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MALEAVAFPH NFFNYGCKEL YSLVEALEKE EIDTITTEED QVQWDASSSS EPKAAAVARR 60 KRRRSRSCKN KEEVENQRMT HIAIERNRRK QMNEYLSVLR SLMPESYIQK GDQASIVGGA 120 IDFVKELEQL VQTLEAQKRI KERRECPRPF GDLFALPRHP QPSLECAFGD VEVTMADSHA 180 TLKVLSRRRP RQLLKLVAAF HNLRLTILHL NITTVDQMVL YSFSVKVEEE CRITSVDEIA 240 SAVYEILGKI HEEASLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	63	RKRRR
2	59	64	RKRRRS
3	77	88	RMTHIAIERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006827950.1	0.0	transcription factor bHLH96
Swissprot	Q9C7T4	6e-73	BH096_ARATH; Transcription factor bHLH96
TrEMBL	W1NIT0	0.0	W1NIT0_AMBTC; Uncharacterized protein
STRING	ERM95366	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00008.115
Entrez Gene	18423285

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]