 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00007.33 |
| Common Name | AMTR_s00007p00063550, LOC18433393 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
| Family |
NAC |
| Protein Properties |
Length: 362aa MW: 40744.6 Da PI: 6.9229 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00007.33 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 166.6 | 8.3e-52 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70
lppGfrF+Ptdeel+v+yL++kv+++++++ + i+++d+yk++PwdLp+++ +e+ew+fFs+rd+ky++
evm_27.model.AmTr_v1.0_scaffold00007.33 11 LPPGFRFNPTDEELIVHYLQNKVTSRPMPV-SLIADIDLYKFDPWDLPSRALFGENEWFFFSPRDRKYPN 79
79****************************.89***************8777899*************** PP
NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
g r+nra++sgyWkatg+dk++l++ ++e g+kk Lvfykgr pkg ktdW+mheyrl
evm_27.model.AmTr_v1.0_scaffold00007.33 80 GARPNRAAASGYWKATGTDKPILAScGNESLGVKKGLVFYKGRPPKGIKTDWIMHEYRL 138
***********************9988889***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MAGLSYLDQQ LPPGFRFNPT DEELIVHYLQ NKVTSRPMPV SLIADIDLYK FDPWDLPSRA 60
LFGENEWFFF SPRDRKYPNG ARPNRAAASG YWKATGTDKP ILASCGNESL GVKKGLVFYK 120
GRPPKGIKTD WIMHEYRLPD SLERPERRSG SMRLDDWVLC RVRHKFNAAK NIADDRDAMS 180
ADTLTGFYEV GEQQILQSKG PDLDVASNIF QSSFPALEYI LASVDPFDAC SNSSMSFQGS 240
STNSFLRGPS EPESPDKNVH SPHIHSPHIH SPHIHSPQIH SPHIHSPQIH SPLKRCIQNE 300
SRDGNVYPFS KKLNFSPDAG FGLARNDQQF CDQSSFHDQS ISNPILEFQQ LFGSMYTGNN 360
M*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-70 | 11 | 171 | 17 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-70 | 11 | 171 | 17 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP17 | 15 | 800 |
