PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.32
Common NameAMTR_s00007p00061550, LOC18433392
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 550aa    MW: 59863.6 Da    PI: 8.344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.32genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056284123
                                             EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                             ++C++C+k F r  nL+ H r H
  evm_27.model.AmTr_v1.0_scaffold00007.32 62 FVCEICNKGFQRDQNLQLHRRGH 84
                                             89*******************88 PP
2zf-C2H213.20.00026138160123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              +kC++C+k++  +s+ k H +t+
  evm_27.model.AmTr_v1.0_scaffold00007.32 138 WKCEKCSKRYAVQSDWKAHSKTC 160
                                              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.2E-86184No hitNo description
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM0035583103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-5126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.2E-8133158No hitNo description
SMARTSM00355130138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAGDGTHLPS SLRGFAENPN PNLEHEQPPP PKKKKRNLPG NPDPDAEVIA LSPRTLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSKEIRK RVYICPEKTC VHNDPSRALG  120
DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYKCDCG TLFSRKDSFI  180
THRAFCDALA EESARLSSVA ASAATTGLTF RNDCNNNAMN TSHLSSSPST SSMPHGFGAF  240
RPNFAPNSEP TGHPKPRLSL WLDQGSGPNS IDLMRSHLNS IEGASNPQTF FSEVTKSIPN  300
SSNSSEFCPS SQAENKACPP ELLHMVPGNM FGSSSPLDFM GFPSDWLDRG SNTGASLSLS  360
TSSSLKDDNG GKTHLGGLAS LYSTPQNHSS HGAHMSATAL LQKAAQIGAT TSNPSMLRGL  420
GVSSCDVQTV NEFQLFGFHE KEPENFNDLM NSLSTPSGNG LFNGVNLGSL PDSGNEFQGL  480
IIPTSTDKRS QNVHFYSGDQ TKVQHEGEQG LTRDFLGVGD NGGPFSQHEM AKFASMRSAM  540
DLSSYNSTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-37134200369Zinc finger protein JACKDAW
5b3h_F1e-37134200369Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843546.10.0protein indeterminate-domain 9
TrEMBLW1PC960.0W1PC96_AMBTC; Uncharacterized protein
STRINGERN052210.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]