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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00007.227 | ||||||||
Common Name | AMTR_s00007p00227160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 20864.8 Da PI: 8.9755 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136 | 1.3e-42 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+ evm_27.model.AmTr_v1.0_scaffold00007.227 18 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPEQQRADAANSLVYEANVRL 86 7******************************************************************** PP DUF260 70 rdPvyGavgvilklqqqleqlkaelallkee 100 rdPvyG++g i++lqqq+++l+ael+++++e evm_27.model.AmTr_v1.0_scaffold00007.227 87 RDPVYGCMGAISALQQQVQSLQAELNAVRAE 117 ***************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.888 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-42 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGRRSPLLAP GALNTITPCA ACKLLRRRCA QECPFSPYFS PHEPHKFASV HKVFGASNVS 60 KMLMEVPEQQ RADAANSLVY EANVRLRDPV YGCMGAISAL QQQVQSLQAE LNAVRAEILR 120 YKYRESQGIL QSVSHSTLLA NAGHTPPPPP LPPPPTQVSR PPISVAVSTS AVYMPASSSD 180 FSSISNDNAS YFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-47 | 9 | 129 | 2 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-47 | 9 | 129 | 2 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006843741.2 | 1e-140 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 3e-70 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | W1PCQ7 | 1e-138 | W1PCQ7_AMBTC; Uncharacterized protein | ||||
STRING | ERN05416 | 1e-139 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 9e-70 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00007.227 |
Publications ? help Back to Top | |||
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