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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00007.18 | ||||||||
Common Name | AMTR_s00007p00041830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | TCP | ||||||||
Protein Properties | Length: 332aa MW: 36278.4 Da PI: 7.2225 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.7 | 1.2e-35 | 120 | 191 | 1 | 72 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..... 65 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++akpai+el + evm_27.model.AmTr_v1.0_scaffold00007.18 120 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKPAIDELKKRthgqs 189 589************************************************************9955432 PP TCP 66 ssssase 72 s + evm_27.model.AmTr_v1.0_scaffold00007.18 190 S-----S 191 1.....1 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.8E-32 | 121 | 188 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.738 | 123 | 181 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MLSSLALCCV SALAVEAHLW LTHEVINNPN LEGERDPNLN QRKPPLNLPP FFQPPLSQTH 60 HHYQTPWLSP FPNNAQTSGQ TSLGNQPENS SENQRQRLSF QSRGGGGEII EVEGGHILRA 120 TGRKDRHSKV CTAKGPRDRR VRLAAHTAIQ FYDVQDRLGY DRPSKAVDWL INKAKPAIDE 180 LKKRTHGQSS SHGNAPCPFG EVDLGGAPHK RSASLLNDQT QLPFSSSGAE VPQLDFLPPN 240 QRPFLEQGIQ QGWAQMEVGS SFMSGFHGVS SSFPEGGTLQ SSSAESYLGL ISPVGFVPGV 300 YPGFRIPARF RGDEEQDDAK LSDPPSTFAH H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-20 | 128 | 181 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-20 | 128 | 181 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 185 | KKRTH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011623141.1 | 0.0 | transcription factor PCF5, partial | ||||
TrEMBL | W1P5T0 | 0.0 | W1P5T0_AMBTC; Uncharacterized protein | ||||
STRING | ERN05207 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-34 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00007.18 |
Publications ? help Back to Top | |||
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