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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00006.298 | ||||||||
Common Name | AMTR_s00006p00267240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 26920.8 Da PI: 8.401 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3e-16 | 52 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+ ++ ++ lG++ W++Ia++++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00006.298 52 RGNFSIEEETAIITLHSILGNK-WSAIAARLP-GRTDNEIKNHWNTHL 97 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-7 | 5 | 30 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.795 | 9 | 46 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.99E-23 | 12 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.011 | 13 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-10 | 33 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.977 | 47 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 52 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-11 | 54 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 58 | 101 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTRAPCCDKS GTKKGPWTPE EDQKLVEYIR LLRCGKSCRL RWTNYLRPDI KRGNFSIEEE 60 TAIITLHSIL GNKWSAIAAR LPGRTDNEIK NHWNTHLKKR LLKMGIDPLT HESIASPDPP 120 NMDQGLSFSA IMSQAGTPTN HFGSQSVRPM NMSGGFCLQE PIHDGDQVNY SGLSKFMEGH 180 GCYLGTMASS MSKELESETA MGQVWPTDGE RIGHGCIEGK GQYWSGLLKC VAAVMKPGGF 240 MKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 101 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020522622.1 | 1e-180 | transcription factor MYB6 | ||||
TrEMBL | W1PFQ6 | 0.0 | W1PFQ6_AMBTC; Uncharacterized protein | ||||
STRING | ERN05900 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 6e-64 | myb domain protein 41 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00006.298 |
Publications ? help Back to Top | |||
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