PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00004.200
Common NameAMTR_s00004p00174960
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YA
Protein Properties Length: 274aa    MW: 30171 Da    PI: 10.365
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00004.200genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.8e-32103159158
                                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                               ++p+YVNaKQy++Il+RRq+Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF
  evm_27.model.AmTr_v1.0_scaffold00004.200 103 EQPIYVNAKQYRQILRRRQSRAKAELENKV-IKARKPYLHESRHLHAMRRARGCGGRF 159
                                               68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-36101162IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.033102162IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-27104159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-23105127IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860107127IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-23136159IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTRTSALRLA RVTQLRQGLS PETELDNEKS HGKGQTSPQV YATISLHSTS SENGRTRCDL  60
GLGQAMVCAN YPHVDQFCGL FSSYGSQAMN GRLLLPLEMT EDEQPIYVNA KQYRQILRRR  120
QSRAKAELEN KVIKARKPYL HESRHLHAMR RARGCGGRFL NTKKTENSKG NNQSGKVNNG  180
QISQAVGSSS SSDAHQSSDN RDLNSGKVVG SRFSTGSEVA SMFSQLDIDQ FQIGQLRQSA  240
FRPLPNIRDG VKMIGIPSKW VTAAPDGCDL LKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20103167266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628581.10.0nuclear transcription factor Y subunit A-10 isoform X4
RefseqXP_020517572.10.0nuclear transcription factor Y subunit A-10 isoform X4
RefseqXP_020517577.10.0nuclear transcription factor Y subunit A-10 isoform X4
TrEMBLW1NEA10.0W1NEA1_AMBTC; Uncharacterized protein
STRINGERM936840.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.35e-42nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]