PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00004.200 | ||||||||
Common Name | AMTR_s00004p00174960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NF-YA | ||||||||
Protein Properties | Length: 274aa MW: 30171 Da PI: 10.365 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.4 | 8.8e-32 | 103 | 159 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p+YVNaKQy++Il+RRq+Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF evm_27.model.AmTr_v1.0_scaffold00004.200 103 EQPIYVNAKQYRQILRRRQSRAKAELENKV-IKARKPYLHESRHLHAMRRARGCGGRF 159 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.7E-36 | 101 | 162 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.033 | 102 | 162 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.3E-27 | 104 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.5E-23 | 105 | 127 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 107 | 127 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.5E-23 | 136 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MTRTSALRLA RVTQLRQGLS PETELDNEKS HGKGQTSPQV YATISLHSTS SENGRTRCDL 60 GLGQAMVCAN YPHVDQFCGL FSSYGSQAMN GRLLLPLEMT EDEQPIYVNA KQYRQILRRR 120 QSRAKAELEN KVIKARKPYL HESRHLHAMR RARGCGGRFL NTKKTENSKG NNQSGKVNNG 180 QISQAVGSSS SSDAHQSSDN RDLNSGKVVG SRFSTGSEVA SMFSQLDIDQ FQIGQLRQSA 240 FRPLPNIRDG VKMIGIPSKW VTAAPDGCDL LKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 103 | 167 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011628581.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X4 | ||||
Refseq | XP_020517572.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X4 | ||||
Refseq | XP_020517577.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X4 | ||||
TrEMBL | W1NEA1 | 0.0 | W1NEA1_AMBTC; Uncharacterized protein | ||||
STRING | ERM93684 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 5e-42 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00004.200 |
Publications ? help Back to Top | |||
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