PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00003.210
Common NameAMTR_s00003p00219710, LOC18431425
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 273aa    MW: 31536 Da    PI: 6.5804
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00003.210genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-192269148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg+WT eEd +lv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00003.210 22 RGPWTVEEDMILVNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 69
                                              89********************************************97 PP
2Myb_DNA-binding52.51.1e-1675118146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               rg+ T+eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00003.210  75 RGNITPEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                                               7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7991769IPR017930Myb domain
SuperFamilySSF466891.16E-3120116IPR009057Homeodomain-like
SMARTSM007171.7E-152171IPR001005SANT/Myb domain
PfamPF002491.1E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-232376IPR009057Homeodomain-like
CDDcd001677.15E-122469No hitNo description
PROSITE profilePS5129423.7170124IPR017930Myb domain
SMARTSM007173.2E-1574122IPR001005SANT/Myb domain
PfamPF002491.7E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2477123IPR009057Homeodomain-like
CDDcd001671.72E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDFSNRPCNS SPHIDEDSEL RRGPWTVEED MILVNYIANH GEGRWNSLAR CAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITP EEQLMILELH SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV  120
QKHAKQLQCD VNSKQFQDTM RYIWMPRLLE RIRAGHRPSE VSTAPSNNNP VFYHAPEITQ  180
ISNSMPSYES CTSVSSSDES PHVSAISDLT DYFFNDISAA HLYGAETQTT SPVYVNQGSD  240
LEHTGWVCGP GEITDNLWNI EDNNTWFWQH QQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251912224126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841613.10.0transcription factor MYB78
SwissprotQ10MB43e-88MYB2_ORYSJ; Transcription factor MYB2
TrEMBLW1P5V40.0W1P5V4_AMBTC; Uncharacterized protein
STRINGERN032880.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-83myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]