PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00003.102
Common NameAMTR_s00003p00135920, LOC18431317
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 301aa    MW: 32878.3 Da    PI: 4.9943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00003.102genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1961109355
                                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  evm_27.model.AmTr_v1.0_scaffold00003.102  61 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEAREIRG 109
                                               9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-3260117IPR001471AP2/ERF domain
PROSITE profilePS5103223.97360117IPR001471AP2/ERF domain
SMARTSM003802.0E-3860123IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2260118IPR016177DNA-binding domain
CDDcd000185.82E-3361117No hitNo description
PfamPF008471.5E-1261109IPR001471AP2/ERF domain
PRINTSPR003677.7E-126172IPR001471AP2/ERF domain
PRINTSPR003677.7E-128399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MCGGAIISDF ISRSRSTVCG YRYNKDEIQT QSVSLSSNKR PFSSGDSTVS QGGKRKRKNL  60
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEAREIRGS KAKLNFPFES  120
PKRKPSVSEP RTLNFSSSNS YQGLNHHDNQ SFDLGLNEQS NGSDLLLFSN NVQPFTTSEL  180
YGFDINNEAS GLSVEVGSQS LASCSEMPPS PFPEPESKGS SEAKPEIKVA EAAEGEKNTA  240
EKLSESLSAF ESYMKFFDIP YLDGAATENA ETIQEGVGAS MELWSFDDAP FMAAPQAAGL  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-21611191574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841505.10.0ethylene-responsive transcription factor ERF073
TrEMBLW1P8890.0W1P889_AMBTC; Uncharacterized protein
STRINGERN031800.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-35ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]