PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00002.492 | ||||||||
Common Name | AMTR_s00002p00265060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24730.3 Da PI: 8.9382 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.1e-08 | 63 | 109 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++++++ L ++lP++ K++ a+i+++A+ +++Lq evm_27.model.AmTr_v1.0_scaffold00002.492 63 RHMMKERQRREKMKQSYLLLHSMLPPR-----SKNDQASIVQQATIELQNLQ 109 58899*********************8.....6***********98888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.89 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-11 | 60 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-6 | 63 | 111 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-6 | 63 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-6 | 63 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0023 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MCDDACYQLH LNGAFAPYTG IFLARKTGLS GTRNLNKRMI ELLRAIWASN NSGAGSLESQ 60 SHRHMMKERQ RREKMKQSYL LLHSMLPPRS KNDQASIVQQ ATIELQNLQN LKNELQRRNH 120 DLNERLIGKR PITEEEKNNE FVNIKLKVGN PSCGIDSMIA ALQSLKSMGL STRAIRSQFS 180 ELEFEATIEV ENKLEVREVE KAVETALMEA EKCRWD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006838847.2 | 1e-160 | transcription factor bHLH92 | ||||
TrEMBL | W1P1G7 | 1e-159 | W1P1G7_AMBTC; Uncharacterized protein | ||||
STRING | ERN01416 | 1e-159 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9763 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00002.492 |
Publications ? help Back to Top | |||
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