PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.489
Common NameAMTR_s00002p00264660, LOC18429495
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 201aa    MW: 22057.6 Da    PI: 9.8342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.489genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.9e-213181155
                                       AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a++aa+++l+g
  evm_27.model.AmTr_v1.0_scaffold00002.489 31 THFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDAAARNLRG 81
                                              589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-143181IPR001471AP2/ERF domain
CDDcd000183.07E-163191No hitNo description
Gene3DG3DSA:3.30.730.101.6E-303289IPR001471AP2/ERF domain
SMARTSM003801.2E-333295IPR001471AP2/ERF domain
PROSITE profilePS5103222.6293289IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-223289IPR016177DNA-binding domain
PRINTSPR003672.5E-103344IPR001471AP2/ERF domain
PRINTSPR003672.5E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAVEALQMVS RSMNDGLGRN SEETSAPPKE THFRGVRKRP WGRFAAEIRD PWKKTRKWLG  60
TFDTAEEAAR AYDAAARNLR GPKAKTNFTI ADDLRSDTIQ ATDLTHFRPW TSSFYAAPSN  120
TTSSSSSETT DFGGFSKGGF PATEKAAGFS KVFPAAEKGG FPVTAEKKTD FSANCDLTLT  180
QSKRQEPQFL FDLNQPAPLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-192990264ATERF1
3gcc_A4e-192990264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838844.11e-145ethylene-responsive transcription factor ERF098
TrEMBLW1P0E91e-144W1P0E9_AMBTC; Uncharacterized protein
STRINGERN014131e-144(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-23ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]