PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00002.340 | ||||||||
Common Name | AMTR_s00002p00248800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 24467.9 Da PI: 5.7481 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.6 | 1.9e-28 | 21 | 119 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAeara 69 C++Ck+++rkC +dC+lapyfpa+++ +f +h lFG ++++ +l+ + ++ +r+da++s++yeA+ar+ evm_27.model.AmTr_v1.0_scaffold00002.340 21 CSSCKYQGRKCDPDCILAPYFPADRMDDFLKFHSLFGIERICPILTLMiEPIKRPDAVKSMLYEANARL 89 ********************************************997769999**************** PP DUF260 70 rdPvyGavgvilklqqqleqlkaelallkee 100 + P G++ +i+ lq+ql+ l+ +l++lk+e evm_27.model.AmTr_v1.0_scaffold00002.340 90 NHP-GGCMYIIHMLQEQLKMLEYKLHSLKQE 119 ***.6********************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.211 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-29 | 21 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGSRQNWCKI MASSNSIRQI CSSCKYQGRK CDPDCILAPY FPADRMDDFL KFHSLFGIER 60 ICPILTLMIE PIKRPDAVKS MLYEANARLN HPGGCMYIIH MLQEQLKMLE YKLHSLKQEP 120 PHWRGVFLGQ LGHGIDNLQR NYSANQELDH GLLEAQQLDH DSFEAQQLEQ QQERVDLQVV 180 HGGTGGVVEG GEVAEVGQHG GVVDTEMMDT QVFLNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-17 | 21 | 119 | 12 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-17 | 21 | 119 | 12 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011621719.1 | 1e-149 | LOB domain-containing protein 6 | ||||
TrEMBL | W1P0V5 | 1e-160 | W1P0V5_AMBTC; Uncharacterized protein | ||||
STRING | ERN01264 | 1e-161 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 8e-22 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00002.340 |
Publications ? help Back to Top | |||
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