PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.320
Common NameAMTR_s00002p00243900, LOC18429326
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 698aa    MW: 76962.6 Da    PI: 6.5879
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.320genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.3e-094594961954
                                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                               Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  evm_27.model.AmTr_v1.0_scaffold00002.320 459 FEHflHPYPKDSDKLMLARQTGLSRSQVSNWFINARVR 496
                                               664459******************************88 PP
2BELL122.81.4e-39321392172
                                      BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 
                                               erq+lq k +kLl +l+eVd+rYkqy++q+q+v+ssF+a+ag g+ak Yt+lAl++iS+hFrcL+dai 
  evm_27.model.AmTr_v1.0_scaffold00002.320 321 ERQDLQTKLTKLLGMLDEVDRRYKQYYHQMQIVVSSFDAIAGAGAAKTYTALALQTISKHFRCLRDAIN 389
                                               799****************************************************************** PP

                                      BELL  70 eqi 72 
                                               +qi
  evm_27.model.AmTr_v1.0_scaffold00002.320 390 GQI 392
                                               *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-61244390IPR006563POX domain
PfamPF075261.4E-49250388IPR006563POX domain
PROSITE profilePS5007112.131437500IPR001356Homeobox domain
SMARTSM003893.1E-9440504IPR001356Homeobox domain
CDDcd000863.09E-12440501No hitNo description
SuperFamilySSF466895.99E-17441507IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27443506IPR009057Homeodomain-like
PfamPF059206.7E-18457496IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MTGMATYFPG SSNQRDTMPT LCLRDPGPNS FPEQSLNGNM LYMNYLTPSD YSDTLTTHHS  60
QPQQNCVGLH VPTSILSQES RAPEASEATA SHHRILSHLV ASRLGENNAY NTTWRDGRNG  120
LLLMQSDNEN PQIGMPTLGI IQNEQNLPIQ GQGLSLSLGT QIPSAIPVHS FQYRQTLSDM  180
SAFLGTNQSG RDGLSKDDPR RKQILGNEVP PSSFTCNGGN PVLKGDVLGT LPRSEAGPAP  240
YALLGLSSTI SNSKYLKAAQ QLLDEVVNVG NALKPNESGR PKSFSMATAS MALKVSENTP  300
SNLSDQQEAN ADAPNELSPT ERQDLQTKLT KLLGMLDEVD RRYKQYYHQM QIVVSSFDAI  360
AGAGAAKTYT ALALQTISKH FRCLRDAING QIRATQKSLG EQDPTSNKSG GGLSRLRFVD  420
QQLRQQRALQ QLGMMQQHAW RPQRGLPESS VSILRAWLFE HFLHPYPKDS DKLMLARQTG  480
LSRSQVSNWF INARVRLWKP MVEEMYKEEI GEAEMDSISS SEKAPTKGNG EGRASDEREE  540
LVGSTERHQL TQFKDSKSEL GSEPEMAGTV AHGDDSGSYG HPSRERRSNN EDCSLLQDAL  600
GTHHPDGHGR FMSYDYARLE REAYAAPRLE REAFAAGKNS VSLTLGLQHC DGQQSYMGVR  660
GDEIYNTNSV VSDSSEYDCI NRRHRFGSSH LLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-16446503158Homeobox protein Meis1
4xrs_B7e-16446503158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838675.10.0BEL1-like homeodomain protein 7
RefseqXP_011621550.10.0BEL1-like homeodomain protein 7
RefseqXP_011621551.10.0BEL1-like homeodomain protein 7
TrEMBLW1P0U20.0W1P0U2_AMBTC; Uncharacterized protein
STRINGERN012440.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-118BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]