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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00002.163 | ||||||||
Common Name | AMTR_s00002p00186590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ARR-B | ||||||||
Protein Properties | Length: 543aa MW: 59719.8 Da PI: 6.6709 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 60.1 | 4.5e-19 | 227 | 282 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGG.sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt+eLH+ F++a+++L +e+ +P +i elm+v+gL ++SHLQkYR evm_27.model.AmTr_v1.0_scaffold00002.163 227 KPRIVWTSELHQIFLDAINKLAHnHEEVIPTKIEELMNVPGLCKGSIASHLQKYRK 282 79*******************75256789**************************6 PP | |||||||
2 | Response_reg | 73.4 | 9.1e-25 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeire 67 vl+vdD+++ +++++++l++ +y ev ++++++ al+++++ + +D++l+ + +p+mdGlell + r evm_27.model.AmTr_v1.0_scaffold00002.163 21 VLVVDDDHACLKVMEELLQSCKY-EVVTCSEATGALNKIRDGNgrFDVVLCNVHLPDMDGLELLNQVRM 88 89*********************.***************988888**********************99 PP HTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 68 eepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 e +lp i+++ +e++ + + ++ Ga dfl Kp+ + +l + evm_27.model.AmTr_v1.0_scaffold00002.163 89 EM-DLPFIMISVDSEKDIVMKGIENGACDFLIKPVRKGQLKT 129 76.*********************************999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.98E-33 | 17 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-37 | 18 | 148 | No hit | No description |
SMART | SM00448 | 8.2E-26 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.952 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-22 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.50E-22 | 22 | 135 | No hit | No description |
SuperFamily | SSF46689 | 1.18E-12 | 224 | 285 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 225 | 285 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 227 | 282 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MAKTLIEELG YPSSFPEGLR VLVVDDDHAC LKVMEELLQS CKYEVVTCSE ATGALNKIRD 60 GNGRFDVVLC NVHLPDMDGL ELLNQVRMEM DLPFIMISVD SEKDIVMKGI ENGACDFLIK 120 PVRKGQLKTI WQHVIRNKIT KKNNGSKEVV KIMSTEDCGG HHGLLNGLEN VHSRNVEDSL 180 GHHEASNGLL HATSLNKGND KKGNKRKDKG KEENDSRCTS ASCTPKKPRI VWTSELHQIF 240 LDAINKLAHN HEEVIPTKIE ELMNVPGLCK GSIASHLQKY RKNLRTEIKD EAPQGDSAPI 300 YVGNLPKERH GSVIAETPDL DAQVFASQMN PMASERRVVN RKGHTNTSTN MVSRLPASLG 360 VSMGKEQLMT GSLISPSMAP VHTISNFLNM ASLEPCDIQS MLPYYKAGGF LQSCNTVRRY 420 HLGNARDNDI ALRSSHSGFG YFDKHSQFHM QNLKIQDISP DMRACTSGAQ SCSMGTGENS 480 PLKNLGQVTT EMVSTNELVQ ENDLKVLYMA PFQNNIVFEG SSEAASVDML DAALNNEGGS 540 NS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020519848.1 | 0.0 | uncharacterized protein LOC18429163 isoform X1 | ||||
TrEMBL | W1NTZ9 | 0.0 | W1NTZ9_AMBTC; Uncharacterized protein | ||||
STRING | ERN01087 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-57 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00002.163 |
Publications ? help Back to Top | |||
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